1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATGgtatgattgtcattcctctctgtggatcaattatgttctcatccctgtcaccttagtatatgctctgtccaatgtgttctgtggtgtctttcacttttcc...
species | Glycine max |
transcript | GLYMA15G12930.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATG GTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGCEST: gi|192314434|gb|FK008404.1|FK008404
genomic: CAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATGgtatgattgt ... ggaatatcagGTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGC
EST: CAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATG GTTCATATCTTTTAGAAAGCCCTGGCGCTGATAGCTCATCTCCAAAGTTGCEST: gi|192314435|gb|FK008405.1|FK008405
genomic: CAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATGgtatgattgt ... ggaatatcagGTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGC
EST: CAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATG GTTCATATCTTTTAGAAAGCCCTGGCGCTGATAGCTCATCTCCAAAGTTGCEST: gi|57576039|gb|CX549010.1|CX549010
genomic: CAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATGgtatgattgt ... ggaatatcagGTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGC
EST: AGGC-TGGTAAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATG GTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGCEST: gi|193640141|gb|FK590944.1|FK590944
genomic: AGGCTTGGT-AAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATGgtatgattgt ... ggaatatcagGTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGC
EST: CAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATG GTTCATATCTTTTAGAAAGCCCTGGCGCEST: gi|58024664|gb|CX711405.1|CX711405
genomic: CAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATGgtatgattgt ... ggaatatcagGTTCATATCTTTTAGAAAGCCCTGGCGC
EST: CAGGCTGGGT-AGCAATCTGGAAAGGATGTGGGTGAAGGATGCAAAGATG TTTCATATC-TTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGC
genomic: CAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATGgtatgattgt ... ggaatatcagGTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATGgtatgattgtcattcctctctgtggatcaattatgttctcatccctgtcaccttagtatatgctctgtccaatgtgttctgtggtgtctttcacttttcc
- - - - - - - AAGCAA
- - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - AAGATG