Sequence
atgc intronic sequence ATGC exonic sequenceATATGTGCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttttctgtgaaagaagtcgtgatcacagtttccatattttgtgccatgcacttttttgcagcagagtcaatggtatatggtgttgtgttgtttcag
Basic information
species | Glycine max |
transcript | GLYMA15G12220.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G12220.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g39630.1 (Oryza sativa), 5'ss of exon 5
ATATGTGCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttttctgtgaaagaagtcgtgatcacagttt-ccatattttgtgccatgcacttttttgcagcagagtcaatggtat--atggtgttgtgttgtttcag
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GTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTTCCAAATTTTGACATTGCATCAGATGCTTCTGCGACCTTTAAGgtgatttgc---tgaagcccgccctgcaaaaagtttgttgggttttcttcctcttttcctaacttatatgcctgaattatactaagaatgttacataggttac-
upper sequence: GLYMA15G12220.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G066051_T01 (Zea mays), 5'ss of exon 5
ATATGTGCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggtt-ttctgtgaaagaagtcgtgatcacagtttccatattttgtgccatgcacttttttgcagcagagtcaatggtatatggtgttgtgttgtttcag
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GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAGgcaagttgcttcattttttaactcataagtac--ttttcatatattgtggtcta-gtctggtcatattatgct--actataagcag----------------
upper sequence: GLYMA15G12220.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G351417_T02 (Zea mays), 5'ss of exon 4
ATATGTGCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttttctgtgaaagaagtcgtgatcacagtttccatattttgtgccatgcacttttttgcagcagagtcaatggtatatggtgttgtgttgtttcag
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GTATGTTTTAGAGTCCGAACATATGAAGAAGTTCTTCGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCTGCTACCTTTAAGgcgagttgtttcactttttacctttcagagtacttttcatatagtgtggtcta-atctggtcatattatgctt--ttgtaagcag----------------
upper sequence: GLYMA15G12220.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G351417_T03 (Zea mays), 5'ss of exon 1
------ATATGTGCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttttctgtgaaagaagtcgtgatcacagtttccatattttgtgccatgcacttttttgcagcagagtcaatggtatatggtgttgtgttgtttcag
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TGACAGGTATGTTTTAGAGTCCGAACATATGAAGAAGTTCTTCGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCTGCTACCTTTAAGgcgagttgtttcactttttacctttcagagtacttttcatatagtgtggtcta-atctggtcatattatgctt--ttgtaagcag----------------
upper sequence: GLYMA15G12220.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G17270.1 (Arabidopsis thaliana), 5'ss of exon 5
ATATGTGCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgt--gggttttctgtgaaagaagtcgtgatcaca-gtttccatattttgtgccatgcacttttttgcagcagagtcaatggtatatggtg-ttgtgttgtttcag
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ATATGTTTTGGACTCGGAGCACGTGAAGAAGTTTTTTTACTACATACAGCTTCCCAATTTCGACATTGCTGCTGATGCTGCTGCAACTTTTAAGgtttgggaacactgcgacatatttggagttccctcataatcacgatctgagtatatctctaatacatgccatcataactccagttccgtgattattttcttgcag
upper sequence: GLYMA15G12220.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G47540.1 (Arabidopsis thaliana), 5'ss of exon 5
ATATGTGCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttttctgtgaaagaagtcgtgatcacagtttccatattttg-tgccatgcacttttttgca-gcagagtcaatggtatatggtgttgtgttgtttcag--
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ATATGTTTTGGAGTCTGACCATGTGAAGAAATTCTTTGATTACATACAGCTTCCAAATTTCGACATTGCTGCCGATGCTGCTGCTACTTTTAAGgt------tccaaaacaaaactcgcatttttagcttggatctttccctgtctgggactagtaaacatgcaatcataactccaaacc-tgtcatttattttcacag
upper sequence: GLYMA15G12220.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0405g00020.t01 (Vitis vinifera), 5'ss of exon 5
ATATGTGCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttt-tctgtgaaagaagtcgtgatcacagtttccatattttgtgccatgcacttttttgcagcagagtcaatggtatatggtgttgtgttgtttcag
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GTACGTCCTGGAATCAGCGCACATGAAGAAGTTTTTTGATTATATTCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCTGCAACTTTTAAGgtttgtggatctgaccaaattgtta-aatgacttttagaacactgcctctctctctctctctctct-cacacacacacacacacgggtacacacacacacacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6724491|gb|AW308890.1|AW308890EST: TCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAG GAGCTCTTGACAAGACATAAATCTACTGTAGCTGAATTCCTATCCAAGAAT
genomic: TCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttttc ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTAGCTGAATTCCTATCCAAGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATGTGCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttttctgtgaaagaagtcgtgatcacagtttccatattttgtgccatgcacttttttgcagcagagtcaatggtatatggtgttgtgttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG