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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTCTGCTGCAATTCAATATGGTACTGGAGCAATTTCTGGTTTCTTTAGCAATGACGATGTCAAAGTTGGTGACATAGTTGTAAAGGACCAGgtaatgatgattgtcaatccctatttcatttttcttttccttcacaccaacatgtcagttgagttggcttctttcataataagttgattaatcaattaacgtgaagtatgttttgatctccattag

Basic information

species Glycine max
transcript GLYMA15G11670.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G04460.2 (Arabidopsis thaliana), 5'ss of exon 4
GTACTTCTGCTGCAATTCAATATGGTACTGGAGCAATTTCTGGTTTCTTTAGCAATGACGATGTCAAAGTTGGTGACATAGTTGTAAAGGACCAGgtaatgatgattgtcaatccctatttcatttttcttttccttcacaccaacatgtcagttgagttggcttctttcataataagttgattaatcaattaacgtgaagtatgttttgatctccattag
| |   | ||  | || |  ||||| || || || |||||||||| |||||||||||| ||||| ||||||||||| || ||||| || || |||||||      |  ||       || |  |     | ||| |       || || | | |          | | |||  | |                                             
GAAAACCCGCGTCTATCCGCTATGGGACGGGTGCTATTTCTGGTTACTTTAGCAATGATGATGTTAAAGTTGGTGATATTGTTGTGAAAGAGCAGgtaaaacgattcatccgcttacatatt-tcagaatattcatgtgagttaatatctaactgctacatctatatatcaccacag--------------------------------------------