Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCAACACCTGACAAAAGAGGATTTAAGCAAGATGTACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGGgtatgttttcacgtggtttgctttatgttacattagcaatttaccttgtaaatctcgtctgagatgtagtaatgctacctgaatttccatcttgtatggt...

Basic information

species Glycine max
transcript GLYMA15G11590.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11590.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0116g01540.t01 (Vitis vinifera), 5'ss of exon 2
TTCTTCAACACCTGACAAAAGAGGATTTAAGCAAGATGTACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGGgtatgttttcacgtggtttgctttatgttacattagcaatttaccttgtaaatctcgtctgagatgtagtaatgctacctgaatttccatcttgtatggt------
||||||||||||||||||||||||||||||||||| | |  |||||||||||||   | ||||| ||||| || |     |||||||||||  | |||||||||  |||  | |   ||  |||   || | |     |||| | ||  |   || || | | |  || |||||   |  |  |      | ||  || |      
TTCTTCAACACCTGACAAAAGAGGATTTAAGCAAGTTATTTTTTGGGGAGTTCCAAATCTTGGATATCAACGGAGCAACCTGCTTTCTCACTAGGACAGGgtatagttttccttttctttttttccctttcttc--tcatttcctttcca---ctagtttaaaa-ataataatgggtctgggttgagggacctgattgattgcctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990488|gb|BI316161.1|BI316161
EST:     TTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGG                         GTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT
genomic: TTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGGgtatgttttc ... agactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT
EST: gi|14990460|gb|BI316133.1|BI316133
EST:     TTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGG                         GTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT
genomic: TTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGGgtatgttttc ... agactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT
EST: gi|15204637|gb|BI427405.1|BI427405
EST:     GGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGG                         GTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT
genomic: GGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGGgtatgttttc ... agactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT
EST: gi|19053297|gb|BM731964.1|BM731964
EST:     TTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGG                         GTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT
genomic: TTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGGgtatgttttc ... agactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT