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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATTGACTGGAATTGTTCTTCTTGGGGGCATGATACCTTATTTATCAGAGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcacatttttatatatttgtatttttcactcctcgttaggtctaactcaacatcaaaagctagctcatgatgtgagaattgtcttccaattatat...

Basic information

species Glycine max
transcript GLYMA15G11350.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11350.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g63520.1 (Oryza sativa), 5'ss of exon 3
TGTATTGACTGGAATTGTTCTTCTTGGGGGCATGATACCTTATTTATCAGAGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgta-------agtcacatttttatat----atttgtatttttcactcc-tcgttag--gtctaactcaacatcaaaagctagctcatgatgtgagaattgtcttcc-aattatat---------------------------------------------
|||  ||||||| ||||||||  |||| || |||||||||||| | || ||| | ||||| | |||  | ||| | ||||| |||||||||||||||||||||       |||   |   |||||      |||   ||||  || || |||||||  ||  |   |||     |  | |       | | ||| ||| ||||||     |  ||                                             
TGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGgtacgagattagtacaagcattatacttggtttttggttttctacaccatcgttaggggtgcaggacaaatcttagggattttctgggctctgaaaatagtcttcttgggtgcatacttagaagttgagttttagtaattcctctcgtatggacctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287660|gb|BI471551.1|BI471551
EST:     AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGT-GAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|58023286|gb|CX710027.1|CX710027
EST:     AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|151400841|gb|EV270655.1|EV270655
EST:     AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|23731152|gb|BU763683.1|BU763683
EST:     AAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|213608886|gb|DB980784.1|DB980784
EST:     CTTAGCAACTCATTGACATTTCCGATG                         GTTTACGTG-GCCTGCAAACAAATTTCCTTCATTCACATGAGCTTCCTGGG
genomic: CTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTG-GAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGG
EST: gi|151397563|gb|EV267436.1|EV267436
EST:     AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|214006459|gb|DB987212.1|DB987212
EST:     ATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: ATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|58016888|gb|CX703630.1|CX703630
EST:     AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT