1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAATGGTAGACTGAACAAATGTGGGGTTATTAGTCCGCGTTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaaaagccttttctttttgtcaaatttcagagatcttctttccttgtccttgttatagaagagcataaactcgtttttgaaaagacatatttg...
species | Glycine max |
transcript | GLYMA15G10950.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGAGTTGACTACCTCAACTGGCATCATGGATCATGAAGAEST: gi|192323577|gb|FK016408.1|FK016408
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCCCAGCTGGCATCATGGATCATGAAGAAEST: gi|7233553|gb|AW568958.1|AW568958
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAAEST: gi|193604231|gb|FK558538.1|FK558538
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAAEST: gi|10845853|gb|BF068889.1|BF068889
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAAEST: gi|6719259|gb|AW306906.1|AW306906
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCTCANCTGGCATCATGGATCATGAAGAAEST: gi|207795806|gb|GD767293.1|GD767293
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAAEST: gi|7232716|gb|AW568070.1|AW568070
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAAEST: gi|9439948|gb|BE440460.1|BE440460
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAATAAEST: gi|6069985|gb|AW099565.1|AW099565
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAAEST: gi|208260388|gb|GE058514.1|GE058514
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCTCAGCTGGACATCATGEST: gi|7233893|gb|AW569235.1|AW569235
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGG-CATCATG
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAAEST: gi|10238315|gb|BE807131.1|BE807131
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGTTGCTCCCCTCAAGACAG TTGGGGTATATTGTGATGACTACCTCAGCTGGCATCATGGATCATGAAGAAEST: gi|10238872|gb|BE807768.1|BE807768
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAAEST: gi|207720602|gb|GD703535.1|GD703535
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAA
EST: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG TTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGAT
genomic: GTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaa ... aatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGGTAGACTGAACAAATGTGGGGTTATTAGTCCGCGTTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcagttcaaaagccttttctttttgtcaaatttcagagatcttctttccttgtccttgttatagaagagcataaactcgtttttgaaaagacatatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaca