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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACATGGGCTTACAACTTTTCCGCAAACATCTTTCATTGTCTCCGGAAGTAGAACACAAAACTGTTACAGGTCTTCTACGAATGATTGAAAGTGAAAGgtaagtccattgtttgcaattcaattttgtacctttatatgcatgcagcttgttgtttaaatgttccacacttccatccatgggatcggggggagagggg...

Basic information

species Glycine max
transcript GLYMA15G10030.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g57290.1 (Oryza sativa), 5'ss of exon 3
GGGACATGGGCTTACAACTTTTCCGCAAACATCTTTCATTGTCTCCGGAAGTAGAACACAAAACTGTTACAGGTCTTCTACGAATGATTGAAAGTGAAAGgtaagtccattgtttgcaattcaattttgtacctttatatgcatgcagcttgttgtttaaatgt-tccacacttccatccatgggatcggggggagagggg-
|||||||||| ||  | || |||||||| ||||||||| ||||||||||  | ||||||||||||||||| ||||||||| || | ||||| ||||| ||||| | | | | |     | | |    |||   | |  ||  |     ||| |||| |   ||| |      ||   |    |||   |||| | | | || 
GGGACATGGGGTTGAAGCTATTCCGCAAGCATCTTTCACTGTCTCCGGAGATTGAACACAAAACTGTTACTGGTCTTCTAAGATTAATTGAGAGTGAGAGgtatgcctactctgctgtactgagccatgt-tgtgtgcat-tacctgtcttattgtgtgtgtgtgtgtgtgttttttttttgggggggggggtgggggtggg

upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 3
GGGACATGGGCTTACAACTTTTCCGCAAACATCTTTCATTGTCTCCGGAAGTAGAACACAAAACTGTTACAGGTCTTCTACGAATGATTGAAAGTGAAAGgtaagtccattgtttgcaattcaattttgtacctttatatgcatgcagcttgttgtttaaatgttccacacttccatccatgggatcggggggagagggg--
|||| ||||| || || |||||||||||||||||||| || ||||| ||||| || ||||||||||| || |||||  |  |||||||||| || ||||||||| | ||  ||   ||| |      | |   |  |  |   |  | |    | | || || || || | | | ||   |    | ||      ||  |  
GGGATATGGGTTTGCAGCTTTTCCGCAAACATCTTTCTTTATCTCCAGAAGTTGAGCACAAAACTGTAACTGGTCTCTTGAGAATGATTGAGAGGGAAAGgtaa-ttcagagtcctcaaatttcagctatttatacaattttttttaccagaatatatacatttttcagagtcctatat-tcatgtgggtattcaagttgtc