1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttcatttctttctttttaattgttttctttgttgattcctgtgttgaacctattgctaatatggctttaattgtttgctgccttttggttaat...
species | Glycine max |
transcript | GLYMA15G09410.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|193381761|gb|FK346582.1|FK346582
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|208308188|gb|GE103610.1|GE103610
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|193661367|gb|FK601705.1|FK601705
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: TGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|26046087|gb|CA783422.1|CA783422
genomic: TGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|207802024|gb|GD774248.1|GD774248
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|193626565|gb|FK575743.1|FK575743
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: TTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|192311008|gb|FK004403.1|FK004403
genomic: TTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|192326436|gb|FK017708.1|FK017708
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCCCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|193508464|gb|FK465747.1|FK465747
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: CTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|193515771|gb|FK473347.1|FK473347
genomic: CTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: GATTTGACTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|208149393|gb|GD948895.1|GD948895
genomic: GATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|120496120|gb|EH224287.1|EH224287
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|8403627|gb|BE059261.1|BE059261
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|120495401|gb|EH223568.1|EH223568
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|208051158|gb|GD848131.1|GD848131
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACGGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|298184439|gb|HO029652.1|HO029652
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|298178788|gb|HO024523.1|HO024523
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACGGCAG AGTTTTGAGGCTTCGAATCAGCGTGCAGTGGCTGTGGTTGTAGAEST: gi|193301421|gb|FK266818.1|FK266818
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|193649766|gb|FK596287.1|FK596287
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: TTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|207793524|gb|GD765668.1|GD765668
genomic: TTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: TGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|31467344|gb|CD409372.1|CD409372
genomic: TGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: GGTGTTGACATCCATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCCATAEST: gi|298166786|gb|HO010225.1|HO010225
genomic: GGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATEST: gi|192321561|gb|FK011791.1|FK011791
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAAT
EST: ATCCTGGATTTGGCTGTTGGCTCTCCGGTGTTGACATCAATACACAGCAG AGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATAEST: gi|193333780|gb|FK298326.1|FK298326
genomic: ATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATA
EST: ACATCAATACACAGCAG AGTTTTGTAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAAT
genomic: ACATCAATACACAGCAGgttcaacttc ... catcatgcagAGTTTTG-AGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAGAGATGGTTGTTGGCTGGTACCATTCGCATCCTGGATTTGGCTGTTGGCTCTCTGGTGTTGACATCAATACACAGCAGgttcaacttcatttctttctttttaattgttttctttgttgattcctgtgttgaacctattgctaatatggctttaattgtttgctgccttttggttaat
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