1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGCTCAGCTCACATGCTATGGGTTGGGGAACGTACCCGCCAACTTGATGGTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGgtgcatataaaatgctctttgcccatggtctttcataattcatatgcattattttgtttatttatttattttgtatacaatatacaattatttttccttc...
species | Glycine max |
transcript | GLYMA15G06020.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGGCATCAAG GTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTGEST: gi|8825878|gb|BE209608.1|BE209608
genomic: TTGGCATCAAGgtgcatataa ... tggttttcagGTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
EST: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAG GTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTGEST: gi|192329375|gb|FK021829.1|FK021829
genomic: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGgtgcatataa ... tggttttcagGTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
EST: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAG GTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTGEST: gi|7796655|gb|AW782052.1|AW782052
genomic: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGgtgcatataa ... tggttttcagGTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
EST: TTGGCATCAAG GTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTGEST: gi|6915150|gb|AW396611.1|AW396611
genomic: TTGGCATCAAGgtgcatataa ... tggttttcagGTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
EST: TTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAG GTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTGEST: gi|22524982|gb|BU083793.1|BU083793
genomic: TTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGgtgcatataa ... tggttttcagGTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
EST: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAG GTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTGEST: gi|9819280|gb|BE554793.1|BE554793
genomic: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGgtgcatataa ... tggttttcagGTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
EST: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAG GTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTGEST: gi|207761194|gb|GD733313.1|GD733313
genomic: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGgtgcatataa ... tggttttcagGTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
EST: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAG GTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTGEST: gi|298190989|gb|HO038468.1|HO038468
genomic: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGgtgcatataa ... tggttttcagGTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
EST: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCACCAAG GTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTGEST: gi|308098317|gb|HO760058.1|HO760058
genomic: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGgtgcatataa ... tggttttcagGTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
EST: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAG GTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTGEST: gi|20498272|gb|BQ273202.1|BQ273202
genomic: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGgtgcatataa ... tggttttcagGTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
EST: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAG GTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTGEST: gi|105633416|gb|DW246779.1|DW246779
genomic: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGgtgcatataa ... tggttttcagGTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
EST: GTGCTCATGTTGAATGCTTGAGAGGAGTTGCTANTCCACTTGGCATCAAG GTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
genomic: GTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGgtgcatataa ... tggttttcagGTGAGTGATAAGATGGTTCCCGATGAACTTGTTAAGCTGATAGATATTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTCAGCTCACATGCTATGGGTTGGGGAACGTACCCGCCAACTTGATGGTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGgtgcatataaaatgctctttgcccatggtctttcataattcatatgcattattttgtttatttatttattttgtatacaatatacaattatttttccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG