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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAGAATTCTCTGGCTCTGAAGAAGACTCTACTAATATTAGTTCTTGCTGGTACTTCAATGGTGATTGCTAACGGTGTTGTTACGCCAGCAATGTCAGgttatatactgatgttacttcgtgtatacctgtagttttttcagacttgctttggtcactgtgttcaggatgatgccaaaaaccatttctgtattgacat...

Basic information

species Glycine max
transcript GLYMA15G05880.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05880.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0142g00250.t01 (Vitis vinifera), 5'ss of exon 3
CTTGAGAATTCTCTGGCTCTGAAGAAGACTCTACTAATATTAGTTCTTGCTGGTACTTCAATGGTGATTGCTAACGGTGTTGTTACGCCAGCAATGTCAGgttatatactgatgttacttcgtgtatacctgtagttttttcagacttgctttggtcactgtgttcaggatgatgccaaaaaccatttctgtattgacat---------------------------------------------------------------
||||||| ||| ||| ||||||| |||   || ||||| ||||| |||||||||||| | ||||| || ||| | || ||||||||||| ||||||||||||| | |||  ||| ||  || | ||| | | |      ||  |       |||   | ||   | |     | |  |||  |  ||||  |  | |  |                                                               
CTTGAGACTTCACTGACTCTGAAAAAGCTGCTTCTAATGTTAGTACTTGCTGGTACTGCTATGGTAATAGCTGATGGGGTTGTTACGCCTGCAATGTCAGgtt-tttac--atgctatctcctttattctttttagcactt--ggacaaaattgaataatgcaataattcaaacgaaaaagtcattttccatgcttaattcattgtagctggagcttagttttgacgataggattgtcccccctctcccctttttttgtacag