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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttcagctaatcttatctagtttaacttcaaaatttgttaagcttgtaaagaatatctaatatggttatatatgacatgagcag

Basic information

species Glycine max
transcript GLYMA15G05630.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05630.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S47_119V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttcagctaatcttatctagtttaacttcaaaatttgttaagcttgtaaagaatatctaatatgg-ttatatatg-acatgagcag---------
|||| ||||||||| | |||||||| ||||||||  | ||||||||||||||||| || ||||||||||| ||||| |||||||| ||||| || || |||||||  ||   ||     |   |   |   ||  ||||| |        ||  | | | |   || ||| |  | |||| || ||||            
TGGACTGGTTTGCCAGGTTGTGGGAGCTGGAGAAGGACGAGTACTGGGGCTATATCACCAACTGTGGTACTGAAGGAAATCTCCACGGCATTCTCGTCGGgttagcgtcttttaccacaacacaaaatccattacaaattcggcgctaacgtgtatacttttatatttggatcctgtatgcacctgagatctttcttccc

upper sequence: GLYMA15G05630.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S13_150V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttcagctaatctt----atc----tagtttaacttcaaaatttgttaagcttgtaaagaatatctaatatggttatatatgacatgagcag------------------------------------------------------------------------------------
|||||||||| ||| || ||||||| || |||||| | ||||||||||| || || || |||||||| |||||||| || ||||| |||||||| ||||||| || | | | | |  ||    ||     || ||||  ||  ||||||||   |||  |   |||  |  |||||| ||   ||   ||   |  |                                                                                    
TGGATTGGTTCGCCAGACTGTGGGAGCTTGAGAAAGAGGAGTACTGGGGATACATCACCAACTGTGGCACAGAAGGAAACCTCCACGGCATCCTTGTTGGgtgagctactgttcacattccagattcgaatattttagttttgaaatttgtcgcgctatttttgaac-tacaatatg-ttgactaccgcacctgtggcgtccctgactgcctcctggttttaaggagtgctgctggtcatactgtgagaagaatttaatctggaaccacacgggcttgcag

upper sequence: GLYMA15G05630.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ11717 (Selaginella moellendorffii), 5'ss of exon 2
TGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttcagctaatcttatctagtttaacttcaaaatttgttaagcttgtaaagaatatctaatatggttatatatgacatgagcag
|||||||||||||  |||||||||| |||||||| || ||||||||||| ||||| ||||||||||| || || || ||||| || ||| |  | || |||| |  ||       || | |||  || |      |  | |  | |  |||  |    | | |   |  |                   
TGGATTGGTTTGCGAGATTGTGGGAGCTGGAGAAGAACGAGTACTGGGGATATATCACAAACTGTGGGACGGAGGGAAATCTTCACGGCTTGTTGGTCGGgtaaacttatttctttcctttcttcttca---cggacttgttcttactttgatacttcttttttccacag-------------------

upper sequence: GLYMA15G05630.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ22493 (Selaginella moellendorffii), 5'ss of exon 2
TGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttcagctaatcttatctagtttaacttcaaaatttgttaagcttgtaaagaatatctaatatggttatatatgacatgagcag
|||||||||||||  |||||||||| |||||||| || ||||||||||| ||||| ||||||||||| || || || ||||| || ||| |  | || |||| |  ||       || | |||  || |      |  | |  | |  |||  |    | | |   |  |                   
TGGATTGGTTTGCGAGATTGTGGGAGCTGGAGAAGAACGAGTACTGGGGATATATCACAAACTGTGGGACGGAGGGAAATCTTCACGGCTTGTTGGTCGGgtaaacttatttctttcctttcttcttca---cggacttgttcttactttggtacttctttttcccacag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022958|gb|BM093992.1|BM093992
EST:     TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
genomic: TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acatgagcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
EST: gi|193639001|gb|FK586012.1|FK586012
EST:     TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATTGGGATTTTGTATGCTTCACGGGAGTCACATT
genomic: TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acatgagcagGAGAGAGGTCTTTCCAGAT-GGGATTTTGTATGCCTCACGGGAGTCACATT
EST: gi|14989994|gb|BI315667.1|BI315667
EST:     CATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
genomic: CATCCTAGTTGGgttagtttca ... acatgagcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
EST: gi|6666379|gb|AW277838.1|AW277838
EST:     CAATCTCCATGGCATCCTANTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
genomic: CAATCTCCATGGCATCCTAGTTGGgttagtttca ... acatgagcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
EST: gi|19348938|gb|BM893470.1|BM893470
EST:     TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA
genomic: TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acatgagcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
EST: gi|193312362|gb|FK274326.1|FK274326
EST:     TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
genomic: TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acatgagcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
EST: gi|6666146|gb|AW277605.1|AW277605
EST:     ACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
genomic: ACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acatgagcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
EST: gi|192298859|gb|FG987604.1|FG987604
EST:     TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
genomic: TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acatgagcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
EST: gi|7146009|gb|AW507931.1|AW507931
EST:     TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA
genomic: TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acatgagcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTA