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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattttttagttagtaaataagcatcgagtcatttggtttgcttgtgtataacatcataatcctgtaatgcag

Basic information

species Glycine max
transcript GLYMA15G05620.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05620.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g06340.1 (Oryza sativa), 5'ss of exon 3
GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtat-tattttttagttagtaa----ataagcatcgagtcatttggtttgcttgtgtataacatcataatcctgtaatgcag---------------------------------------
  |||| | || ||  |  |    |||||| ||||||| |||||||||||||| |||||||| || |||||||| || |||||||||||||||||||| |   | |  ||  | ||      |    | ||  ||      |   || || | ||  ||   ||  | |||   ||                                       
AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTgtaagtatctgcatgtgtgtgtgcaatatcgcatatctggaaccaaacaaatgatttatggagaagctctgcata-tataagctaggttaataacatattttctgtggggtgcatctgcaggtag

upper sequence: GLYMA15G05620.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G122039_T06 (Zea mays), 5'ss of exon 3
GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattttttagttagtaaataagcatcgagtcatttggtttgcttgtgtataacatcataatcctgtaatgcag--------
   ||| | || ||  |  |   ||||||| |||| || |||||||||||||| ||||| |||||||| ||||| || || |||||||||||||||| |  ||   || | | |  | | | |   |||||| |    ||  | | | |||    |  |  || ||             
AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactcgttcccagcttgcactttaccgttt-gtcatt-gtcaagccagagaagaaccaattttttatggaacatgcatctgcag

upper sequence: GLYMA15G05620.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G122039_T01 (Zea mays), 5'ss of exon 2
----------GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattttttagttagtaaataagcatcgagtcatttggtttgcttgtgtataacatcataatcctgtaatgcag--------
             ||| | || ||  |  |   ||||||| |||| || |||||||||||||| ||||| |||||||| ||||| || || |||||||||||||||| |  ||   || | | |  | | | |   |||||| |    ||  | | | |||    |  |  || ||             
CTGTTATCAGAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactcgttcccagcttgcactttaccgttt-gtcatt-gtcaagccagagaagaaccaattttttatggaacatgcatctgcag

upper sequence: GLYMA15G05620.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G122039_T07 (Zea mays), 5'ss of exon 3
GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattttttagttagtaaataagcatcgagtcatttggtttgcttgtgtataacatcataatcctgtaatgcag------------
   ||| | || ||  |  |   ||||||| |||| || |||||||||||||| ||||| |||||||| ||||| || || |||||||||||||||| |  ||   || | | |  | | | |   |||||| |    ||  | | | |||    |  |  || ||                 
AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactcgttcccagcttgcactttaccgttt-gtcatt-gtcaagccagagaagaaccaattttttatggaacatgcatctgcaggtag

upper sequence: GLYMA15G05620.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G15120.2 (Arabidopsis thaliana), 5'ss of exon 5
GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattttttagttagtaaataagcatcgagtcatttggtttgcttgtgtataacatcataatcctgtaatgcag
|| ||  | || || || || |||||||||||||| || || || |||||||| || |||||||| || |||   || |||||||||||||||||  ||| ||      |  ||  |     |    |||| || | | ||| |  |                        
GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaag--ttacttgaattatgttattttgctgtttcatcatatgatat-cttctaaag-----------------------

upper sequence: GLYMA15G05620.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G01090.2 (Arabidopsis thaliana), 5'ss of exon 4
GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattttttagttagtaaataagcatcgagtcatttggtttgcttgtgt-ataacatcataatcctgtaatgcag-------------------------------------------
               || || | |||||| ||||| || ||||| |||||||| |||||||||||||| |||  |||| ||||||||||||||||| |     |   |||  |   ||  || | |    || |     ||    | | ||   ||    | || | |  |                                            
---------------ATCCAAGATGATGAGTCTGGCCACAAACATTGCACTGGGCAATATTTTGATTACTGGCATTGTGTTGACAAATGTGTAAGTGTGTGAGTGCTGTTTTTCTgtatacacctaaagtttcgcgaaactaaaatgacaaagacagctacttggagtctatttttctttccagggttatataaaatgatgtggatgcttaacat

upper sequence: GLYMA15G05620.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G15120.1 (Arabidopsis thaliana), 5'ss of exon 4
GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagt-------attatttt--ttagttagtaaataagcatcgagtcatttg--gtttgcttgtgt-ataacatcataatcctgtaatgcag
|| ||  | || || || || |||||||||||||| || || || |||||||| || |||||||| || |||   || ||||||||||||||||||       ||||| ||  || | |  |  || |  ||    || | |   ||||| |  ||  || | ||   | |   |   | |||
GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttacttgaattatgttattttgctgtttcatca-tatgatatcttctaaagtttgatactgagatgaaattggattttggatcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298198142|gb|HO039681.1|HO039681
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|7639289|gb|AW733615.1|AW733615
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|58014473|gb|CX701215.1|CX701215
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|51343117|gb|CO983850.1|CO983850
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|14999290|gb|BI320299.1|BI320299
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|12772718|gb|BG237636.1|BG237636
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|18733830|gb|BM527835.1|BM527835
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|7639244|gb|AW733571.1|AW733571
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|12690066|gb|BG156402.1|BG156402
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|20814521|gb|BQ298999.1|BQ298999
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|7146375|gb|AW508297.1|AW508297
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|17402023|gb|BM178805.1|BM178805
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|22931573|gb|BU548712.1|BU548712
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|208152532|gb|GD950449.1|GD950449
EST:     GGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: GGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|31471526|gb|CD413554.1|CD413554
EST:     TTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: TTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|58023473|gb|CX710214.1|CX710214
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|10848067|gb|BF070624.1|BF070624
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|151400909|gb|EV270723.1|EV270723
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|13251785|gb|BG362688.1|BG362688
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|18848956|gb|BM568066.1|BM568066
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|6914391|gb|AW395921.1|AW395921
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|151410688|gb|EV280503.1|EV280503
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|18726815|gb|BM523771.1|BM523771
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|18848720|gb|BM567832.1|BM567832
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|254315068|gb|GR830061.1|GR830061
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|151401498|gb|EV271312.1|EV271312
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
EST: gi|23734278|gb|BU765362.1|BU765362
EST:     AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGT                         GTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG
genomic: AACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtatta ... tgtaatgcagGTTGCACCGAAGCTATTCACCAAACTGAAGTAATGGAGAAGGATTTGATGG