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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactagtgaaattgagacaacttttcaccattaattcattctcactcaaacatttgcttatgtaaacaaaaatcaatattgtgtag

Basic information

species Glycine max
transcript GLYMA15G05210.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05210.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0034g01210.t01 (Vitis vinifera), 5'ss of exon 3
AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactagtgaaattgagacaact-tttcaccattaattcattctcactcaaacatttgct-------tatgtaaacaaaaatcaatattgtgtag--
||||| || || || || ||| ||||||| || |||||||||||||| |||||||||||||| || || ||||||||||  ||||||||||||||||||||| | | | | ||    ||  |  || | |  |  || |   |||||      |||  |       ||| ||   |   ||   | || |||||  
AGACCCAAATTCTTAAGGTCAATTGCAAACTACCAAGCAATCAATGTGGATACTCTAAGGGCTCAGAACATGGAATCTTTTCCATTCTTCAACCAGgtaatatttgagtagttcccgcatttgcttaatctctggttgacattcacttgggtttttattcttattttatatatttatttatttgttttttgtagaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105519|gb|BI893259.1|BI893259
EST:     TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG                         GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTGGCTGTAAAA
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTGGCTGTAAAA
EST: gi|31462753|gb|CD404781.1|CD404781
EST:     TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG                         GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTGGCTGTAAAATTT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTGGCTGTAAAATTT
EST: gi|31458564|gb|CD400592.1|CD400592
EST:     TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG                         GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTGGCTGTAAAATTT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTGGCTGTAAAATTT
EST: gi|31458909|gb|CD400937.1|CD400937
EST:     TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG                         GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTGGCTGTAAAATTT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTGGCTGTAAAATTT
EST: gi|17153711|gb|BM143644.1|BM143644
EST:     TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG                         GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTGGCTGTAAAATTT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTGGCTGTAAAATTT
EST: gi|213593886|gb|DB961886.1|DB961886
EST:     TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG                         GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTGGCTGTAAAATTT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTGGCTGTAAAATTT