Sequence
atgc intronic sequence ATGC exonic sequenceTGATTTTGTTGATTTTTTCAACAACCATCCCAAACTGCGCAAGTTTGACATTCATGGAGCCATGTTTGCAGCACTTTGCCAGAGGAACAGCCTGAAACATgtaaattcacaataacatttttatgttataaatctgatttaggttgttctatgaaatcttatctaatgatgatgttcatttgcag
Basic information
species | Glycine max |
transcript | GLYMA15G05200.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G05200.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g36570.1 (Oryza sativa), 5'ss of exon 2
TGATTTTGTTGATTTTTTCAACAACCATCCCAAACTGCGCAAGTTTGACATTCATGGAGCCATGTTTGCAGCACTTTGCCAGAGGAACAGCCTGAAACATgtaaattcacaataacatttttatgttataaatctgatttaggttgttctatgaaatcttat----ctaatgatgatgttc-atttgcag---------------------
||| |||||||||| ||||||| ||| || || || ||||||||| || ||||| ||||||||||| || | ||||||| ||||||||||||| |||| | |||| | |||| | | | || || || ||| | |||| || | ||| ||| ||| |||||
GGATCTTGTTGATTTCTTCAACAGCCACCCGAAGCTCATCAAGTTTGAGATCCATGGCGCCATGTTTGCTGCCATGTGCCAGAAGAACAGCCTGAAAAATgtgcgt-caca-tcacatcataccactttctttcaatttcagattggtatatggtcgctggttttgctaccaatgcagttagatttgtctaattttacattgtcaatgcag
upper sequence: GLYMA15G05200.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g28120.1 (Oryza sativa), 5'ss of exon 3
TGATTTTGTTGATTTTTTCAACAACCATCCCAAACTGCGCAAGTTTGACATTCATGGAGCCATGTTTGCAGCACTTTGCCAGAGGAACAGCCTGAAACATgtaaattcacaataacatttttatgttataaatctga--tttaggttgttctatgaaatcttatctaatga-tgatgttcatttgcag---------
||||| || || || ||||||| ||| || || || ||||||||||| |||||||| ||||||||||| || || ||||||| |||||| |||| |||| | | | ||| | ||| ||| ||||||||||| | | | | || ||| | || || | |
CGATTTGGTCGACTTCTTCAACAGCCACCCGAATCTCCGCAAGTTTGATATTCATGGTGCCATGTTTGCTGCTCTGTGCCAGAAAAACAGCTTGAAGAATgtgagtgtttggtttggctttcgcggcatagcattgaactttaggttgttatgtaaggtattgatagatggctaatatttgtgaattgtgaatgcag
upper sequence: GLYMA15G05200.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0034g01430.t01 (Vitis vinifera), 5'ss of exon 2
TGATTTTGTTGATTTTTTCAACAACCATCCCAAACTGCGCAAGTTTGACATTCATGGAGCCATGTTTGCAGCACTTTGCCAGAGGAACAGCCTGAAACATgtaaattcacaataacatttttatgttataaatc-tgatttaggttgttctatgaaatctta---tctaatgatgat-gttcatttgcag--------
||| |||||||| || || |||| |||||| || |||| || |||||||| ||||||||||||||||| || |||||||||| ||||||||||||| ||||||||| | | | ||| ||| ||| | ||||| | | | |||| | | ||| | ||| | || ||| ||
TGACTTTGTTGACTTCTTTAACAGCCATCCTAAGCTGCAAAAATTTGACATCCATGGAGCCATGTTTGCTGCTCTTTGCCAGAAGAACAGCCTGAAAAATgtaaattgatgagatcataacaatgctattccccctgattcaaaaggatgctcaaaatttagcattttaacaaagattggtctttttcattcttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192306315|gb|FG996887.1|FG996887EST: TTCATGGAGCCATGTTTGCAGCACTTTGCCAGAGGAACAGCCTGAAACAT GTGGATCCAGGATTTTTAATTCCATGTTTGGAGGAGGTTGTGATCACAGTG
genomic: TTCATGGAGCCATGTTTGCAGCACTTTGCCAGAGGAACAGCCTGAAACATgtaaattcac ... tcatttgcagGTGGATCCAGGATTTTTAATTCCATGTTTGGAGGAGGTTGTGATCACAGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATTTTGTTGATTTTTTCAACAACCATCCCAAACTGCGCAAGTTTGACATTCATGGAGCCATGTTTGCAGCACTTTGCCAGAGGAACAGCCTGAAACATgtaaattcacaataacatttttatgttataaatctgatttaggttgttctatgaaatcttatctaatgatgatgttcatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA