Sequence
atgc intronic sequence ATGC exonic sequenceTCTAAGGGACTTGTCTTCTCCCGGAAAAAGTGGCAGCATTTTCTATCTTTCTAAAGATGATAGATTTGTGATAAAGACTGTGAATAAATCTGAACTAAAGgtttgtagtcccttcattattatacttatgaacatggattagtttctaaaacacattaaaagctttccctcttgccttttacatgtattggtcttgttag...
Basic information
species | Glycine max |
transcript | GLYMA15G05150.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G05150.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g49510.1 (Oryza sativa), 5'ss of exon 5
TCTAAGGGACTTGTCTTCTCCCGGAAAAAGTGGCAGCATTTTCTATCTTTCTAAAGATGATAGATTTGTGATAAAGACTGTGAATAAATCTGAACTAAAGgtttgtagtcccttcattattatactt---atgaacatgg----attagtttctaaaacacattaaaagctttccctcttgccttttacatgtattggtcttgttag---------------------------------------------------------------------
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TCTAAAGGAGCTTTCTTCACCTGGGAAAAGTGGCAGCATTTTCTATCTTTCTCAAGATGAACGTTTTGTTATAAAAACATTGAGGAAAACTGAGCTGAAGgtatgacccaccctcaatttttttcttgcaataacaatagtgttatttgttaattaaaaatgactaaaactgagctttacaagaacaacaaagatttgtgctaaaaaccgtgtatatccttgttaagtgataagatatgcctactgcagattggtttgatgtaatacgtgctgcag
upper sequence: GLYMA15G05150.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0034g01790.t01 (Vitis vinifera), 5'ss of exon 6
TCTAAGGGACTTGTCTTCTCCCGGAAAAAGTGGCAGCATTTTCTATCTTTCTAAAGATGATAGATTTGTGATAAAGACTGTGAATAAATCTGAACTAAAGgtttgta-gtcccttcattattatacttatgaacatggattagtttctaaaacacattaaa-agctttccctcttgccttt-tacatgtattggtcttgttag---
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TCTCAGGGAGCTTCCTTCTCCAGGGAAAAGTGGCAGTCTCTTCTATCTTTCTCATGATGACAGATTTTTGATTAAGACTTTAAAAAAATCTGAACTAAAGgtatgtgcgtattgcaactatcattatttttagt-tga---agttcctg--gcatgttaactaacttgtctatttgcatgaatgtagctctcagctaatttcatacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193633630|gb|FK584714.1|FK584714EST: TAGATTTGTGATAAAGACTGTGAATAAATCTGAACTAAAG GTTCTGCTCAGTATGCTTCCTAAATATTACCGTCATGTAGGAGATCATGAA
genomic: TAGATTTGTGATAAAGACTGTGAATAAATCTGAACTAAAGgtttgtagtc ... tttcttgtagGTTCTGCTCAGTATGCTTCCTAAATATTACCGTCATGTAGGAGATCATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTAAGGGACTTGTCTTCTCCCGGAAAAAGTGGCAGCATTTTCTATCTTTCTAAAGATGATAGATTTGTGATAAAGACTGTGAATAAATCTGAACTAAAGgtttgtagtcccttcattattatacttatgaacatggattagtttctaaaacacattaaaagctttccctcttgccttttacatgtattggtcttgttag
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