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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGACATGCTTCTATGTTGGCGTGGCTGCAGTTGCAGTTGGATCTTCATACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaagctaacttcaattttattataaggcaaatgctaaccaatgcccttccaatgccccaagaccattggttaagaaaataaaaggagaaagat...

Basic information

species Glycine max
transcript GLYMA15G05100.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05100.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0034g02170.t01 (Vitis vinifera), 5'ss of exon 4
CTGGACATGCTTCTATGTTGGCGTGGCTGCAGTTGCAGTTGGATCTTCATACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaagctaact-tcaattttattataaggcaaatgctaaccaatgcccttccaatgccccaagaccatt--ggttaagaaaataaaaggagaaagat-----------
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CTGGACATTTTTTTTCATTGGTGTGGCTGCTGTTGGAATTGGATCTTCTTACTATCATCTCAAACCAAATGATGCACGTCTTGTGTGGGATCGCTTGCCGgtgagcttattcttgcaatgaaagacgctattatatctgagaatattggttttttgctttaatctagaatctgtttcagttcagaatcttctaagctgtttttaatcgatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298195343|gb|HO039174.1|HO039174
EST:     ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCC                         ATGACCGTCACTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
genomic: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaa ... ttcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: gi|18734259|gb|BM528080.1|BM528080
EST:     ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCC                         ATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
genomic: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaa ... ttcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: gi|26045603|gb|CA783140.1|CA783140
EST:     ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCC                         ATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
genomic: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaa ... ttcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: gi|298193280|gb|HO033714.1|HO033714
EST:     ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCC                         ATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
genomic: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaa ... ttcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: gi|9898820|gb|BE607788.1|BE607788
EST:     ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCC                         ATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
genomic: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaa ... ttcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: gi|298199382|gb|HO042745.1|HO042745
EST:     ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCC                         ATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
genomic: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaa ... ttcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT