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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCAGgtttgttttgttctcttttgtattaattagactagattttaggttttaactggggtgcaaacggtgctgatgctgcatgatattgtccaattctgatatt...

Basic information

species Glycine max
transcript GLYMA15G05020.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05020.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G700683_T01 (Zea mays), 5'ss of exon 2
TACTAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTC---AGgtttgttttgttctcttttgtatta----attagactagattttaggttttaactggggtgcaaacggtgc-tgatgctgcatgatat--tgtccaattctgatatt----------------------------------------
   ||| ||||||||  |||| |||||||| || |||||| | || || || || ||||||||||| ||||||||||| |||||||| ||||| ||||   |||||||||||    || ||| | | |    |||  | ||  ||||   ||||  ||  | |       ||   |||   ||   | | |  |   ||| |    | |                                         
---TAGGAAGAAGGTGCTGATATTGGGTGGTGGGCCAAATCGCATAGGCCAGGGCATTGAGTTTGATTACTGTTGTTGCCATGCATCATTTGCACTTCGAGAGgtttgtttttgcatcatttatttcatcttattccagtattttttttctttttcctcagttctgggttgtttgtgacattgtgagttttcttagtcaactgcattctatcgtatgaccttatataaatgttttcatatctatttacag

upper sequence: GLYMA15G05020.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G061990_T01 (Zea mays), 5'ss of exon 2
TACTAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTC---AGgtttgtt------------ttgttctcttttgtattaattagactagattttaggttttaactggggtgcaaacggtgctga---tgctgcatgatat-tgtccaattctgatatt-----------------------------------------------------------
   ||  ||||||||  |||| |||||||| || |||||| | || || || || ||||||||||| ||||| ||||| |||||||| ||||| ||||   |||||||||            || ||| | |     || | ||  ||   |  |  ||| ||  | |  ||  |    |  |||   | ||   | | ||   | ||||| |                                                                 
---TAAGAAGAAGGTGCTGATATTGGGTGGTGGGCCAAATCGCATAGGCCAGGGCATTGAGTTTGATTACTGCTGTTGCCATGCATCATTTGCACTTCGAGAGgtttgtttttttgcatcatttattcccatcctgtttcagtaatctttttcctcagttctagattgtttgtgagaaattgtgaattttcttagtcaaatgcattcaattgtatggccctgtatttttctgtatggctgttttggcactaatgttttgctcttttatctctttatag

upper sequence: GLYMA15G05020.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 2
TACTAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCAGgtttgttttgttctcttttgtattaattagactagattttaggttttaactggggtgcaaacggtgctgatgctgcatgatattgtccaattctgatatt----------
 |  |  |||||||| ||||||||||||||||| |||||  | ||||||||||||||||| ||||| ||||||||||| ||  |||| || ||  | ||||| ||| || |   |  |   |     |   | | |    ||    |||     ||   |||  |  | |||||  |     || || | || |  || |          
CAACAAGAAGAAGGTTTTGATTTTGGGTGGAGGGCCAAACCGCATTGGTCAAGGGATTGAATTTGATTACTGTTGTTGCCACACATCTTTCGCCTTACAGgtatgtctt-tagacaatctaagcgtctctcccaaaagccag----taaacattgtttcaactttttt-atgctaaacttacttatctactttttttaatttatttgcag

upper sequence: GLYMA15G05020.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 2
TACTAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCAGgtttgttttgttctcttttgtattaattagactagattttaggttttaactggggtgcaaacggtgctgatgctgcatgatatt---gtccaattctgatatt
|   || |||||||| || ||||| ||||||||||||||  | ||||||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||| ||||||| |     |  |  ||       ||  || |   || |  ||  |||        | |  ||||  | || |||      |    ||   |   
TCAAAGGAAGAAGGTTTTAATTTTAGGTGGAGGACCAAACCGGATTGGTCAAGGTATTGAGTTTGACTACTGCTGCTGTCATACATCCTTTGCTCTCCAGgtatgttttgcttctgctgtttgtaggctatttatgttctc--ttcttcctatggtttttggtctccacatgcctcttgttatgtgaacctgggtccattga-