1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCAGCGTTGAGGGAAGCTTACAAGAAGAAGAAATACCTTCCTTTGGATCTGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttcattccttactcttccaatttattgctttttattttatttctattctattgcattttctgttcattatgctatgactttgtagtgtcctcaa...
species | Glycine max |
transcript | GLYMA15G04730.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACACAGCGTGAGAAGAAGAAAGAATTGTATTTTCCAATGEST: gi|26269460|gb|CA820523.1|CA820523
genomic: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttca ... ttccttacagGCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
EST: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATGEST: gi|298199272|gb|HO042635.1|HO042635
genomic: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttca ... ttccttacagGCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
EST: TGCGTCCCAAGAAGACTAGAGCCATCAGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTACTTTCCAATGEST: gi|22539768|gb|BU089611.1|BU089611
genomic: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttca ... ttccttacagGCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
EST: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATGEST: gi|14259744|gb|BG882652.1|BG882652
genomic: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttca ... ttccttacagGCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
EST: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATGEST: gi|7028584|gb|AW458367.1|AW458367
genomic: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttca ... ttccttacagGCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
EST: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATGEST: gi|7233279|gb|AW568627.1|AW568627
genomic: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttca ... ttccttacagGCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
EST: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATGEST: gi|207796380|gb|GD769730.1|GD769730
genomic: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttca ... ttccttacagGCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
EST: GTCCCAAGAAGACCAGTAGTCCATTCAGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATGEST: gi|298185885|gb|HO031046.1|HO031046
genomic: GTCCCAAGAAGACCAG-AG-CCA-TCAGAAGGCGCTTAACTAAGCACCAGgtacctttca ... ttccttacagGCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
EST: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACTAG GCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATGEST: gi|298173583|gb|HO016919.1|HO016919
genomic: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttca ... ttccttacagGCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
EST: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATGEST: gi|207840821|gb|GD811014.1|GD811014
genomic: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttca ... ttccttacagGCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
EST: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATGEST: gi|6341759|gb|AW164645.1|AW164645
genomic: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttca ... ttccttacagGCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
EST: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
genomic: TGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttca ... ttccttacagGCTTCATTGAAGACACAGCGTGAGAAGAAGAAGGAATTGTATTTTCCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAGCGTTGAGGGAAGCTTACAAGAAGAAGAAATACCTTCCTTTGGATCTGCGTCCCAAGAAGACCAGAGCCATCAGAAGGCGCTTAACTAAGCACCAGgtacctttcattccttactcttccaatttattgctttttattttatttctattctattgcattttctgttcattatgctatgactttgtagtgtcctcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc