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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAATGGCAACGGATTCTTCAAATGGTAATGGACATCACCAGACAACAACAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcattgcatcttcttattttgattaccattttccatgcaacataatttacgttgcttgcttgattccaatttcatggtcattcagacatttcagt...

Basic information

species Glycine max
transcript GLYMA15G04500.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611728|gb|DB962965.1|DB962965
EST:     CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAG                         TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
genomic: CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataatagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
EST: gi|8827206|gb|BE210936.1|BE210936
EST:     CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAG                         TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
genomic: CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataatagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
EST: gi|151412093|gb|EV281905.1|EV281905
EST:     CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAG                         TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
genomic: CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataatagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
EST: gi|192316740|gb|FK006443.1|FK006443
EST:     CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAG                         TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
genomic: CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataatagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
EST: gi|213591579|gb|DB955787.1|DB955787
EST:     CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAG                         TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
genomic: CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataatagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
EST: gi|10237388|gb|BE806276.1|BE806276
EST:     CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAG                         TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
genomic: CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataatagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
EST: gi|213592188|gb|DB965979.1|DB965979
EST:     CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAG                         TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
genomic: CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataatagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
EST: gi|192316741|gb|FK006444.1|FK006444
EST:     CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAG                         TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
genomic: CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataatagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
EST: gi|16279667|gb|BI943554.1|BI943554
EST:     CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAG                         TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
genomic: CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataatagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
EST: gi|192317198|gb|FK007909.1|FK007909
EST:     CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAG                         TTCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
genomic: CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataatagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
EST: gi|192296657|gb|FG991225.1|FG991225
EST:     CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAG                         TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
genomic: CAAAGCAGCCTCCTTTGCCATCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataatagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC