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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGATGCACAAATATATTGGCTCAGATGTAACATCAATGGTAACACTACCAGTTATTATTTTTGAACCAATGACTATGCTTCAGAAAATGGCAGAGgtttgcacagctctattttattttttgtgttttctgctttgttaaattgctttatttgtttgtattggcacttgattgagctttgaattgttcgaactag

Basic information

species Glycine max
transcript GLYMA15G04210.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 5'ss of exon 3
GAAGATGATGCACAAATATATTGGCTCAGATGTAACATCAATGGTAACACTACCAGTTATTATTTTTGAACCAATGACTATGCTTCAGAAAATGGCAGAGgtttgcacagctctattt-tattttttgtgttttctgctttgttaaattgctttatttgtttgtattggcacttgattgagctttgaattgttcgaactag---
||||||||||||||| || || ||  ||||||| |||||| | || ||||| || || || |||||||| |||||||| |||||||||||||||||||||||||| || | |  | |   ||||   | |   |   || ||||    | ||     |||  | |||||||     ||  | |   | ||| |     |||   
GAAGATGATGCACAAGTACATAGGGGCAGATGTTACATCACTTGTGACACTTCCGGTCATCATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCAGAGgtttgtactgttaaactcacatttagagcgcagtagcctgtgttcgtcttctcatcctgt--gcattggcagaatgttacgttc--atttgcttagcgtagtat

upper sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G174644_T01 (Zea mays), 5'ss of exon 3
GAAGATGATGCACAAATATATTGGCTCAGATGTAACATCAATGGTAACACTACCAGTTATTATTTTTGAACCAATGACTATGCTTCAGAAAATGGCAGAGgtttgcacagctctattttattttttgtgttttctgctttgttaaattgctttatttgtttgtattggcacttgattgagctttgaattgttcgaa-ctag------
|||||||||||||||||| || || |||||||| |||||| | || ||||| ||||| || |||||||| |||||||| ||||||||||||||||| |||||||| ||   | | | |||| || ||  ||       |||   | || |  |     | |  |   | |   |  || |  |  ||||||| ||  || |      
GAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCCGAGgtttgtac---tttgtattatgttctgaattagacttcttga-gatttacactgcccatctacaactgaa---ggatgtgtctgcaattgtttgattctcgacggct

upper sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
GAAGATGATGCACAAATATATTGGCTCAGATGTAACATCAATGGTAACACTACCAGTTATTATTTTTGAACCAATGACTATGCTTCAGAAAATGGCAGAGgtttgcaca--gctctattttattttttgtgttttctgctttgttaaattgctttatttgtttgtattggcacttgattgagctttgaattgttcgaactag
||||||||||||||| || || || |||||||| |||||| | || ||||| ||||| || |||||||| |||||||| ||||||||||||||||| |||||||| ||   | ||    |||   ||  ||   | | |  ||   |  | |       |  ||| |  ||| ||| |||| | |||   | ||  ||    
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagacttcttgagatttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa--

upper sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGATGATGCACAAATATATTGGCTCAGATGTAACATCAATGGTAACACTACCAGTTATTATTTTTGAACCAATGACTATGCTTCAGAAAATGGCAGAGgtttgcacagctctattttattttttgtgttttctgctttgttaaattgctttatttgtttgtattggcacttgattgagctttgaattgttcgaactag
|||||||||||| |||||||| || || ||| | || |||||||| || || || ||| |||| ||||| || ||||||||||| ||||| ||||| |||||| |       |   |   | |  |||||||     | | |    ||| |||  |||| |||| ||     | |   |  |   ||||  ||  |    
GAAGATGATGCAGAAATATATAGGTTCGGATATTACGTCAATGGTGACTCTTCCTGTTGTTATATTTGAGCCTATGACTATGCTCCAGAAGATGGCTGAGgttagtgttatacatctaattctcctgtgtttgtaagtattt---gttgtttt--ttgtgtgtactgtattataac--atttgcaaatttctcacag---

upper sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g04930.t01 (Vitis vinifera), 5'ss of exon 3
GAAGATGATGCACAAATATATTGGCTCAGATGTAACATCAATGGTAACACTACCAGTTATTATTTTTGAACCAATGACTATGCTTCAGAAAATGGCAGAGgtttgcacagctctattttattttttgtgttttctgctttgttaaattgctttatttgtttgtattggcacttgattgagctttgaattgttcgaactag
|||||||||||| || ||||| || |||||||| || |||||||| ||||| |||||| | |||||||| |||||||| |||||||||||||||||||| || ||  |       |||   |   | || | | |   ||| || ||||  |   | |  ||| |      |||    |  | ||||| | | |    ||
GAAGATGATGCAAAAGTATATAGGTTCAGATGTCACCTCAATGGTGACACTTCCAGTTCTGATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCAGAAgtatgtgccatctagtttgtataagtttgatgtttatcttggtagattgtctc--tagcctgtttcaaatgttg--caaattgtgaat-gcttgtgacag

upper sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ19778 (Selaginella moellendorffii), 5'ss of exon 3
GAAGATGATGCACAAATATATTGGCTCAGATGTAACATCAATGGTAACACTACCAGTTATTATTTTTGAACCAATGACTATGCTTCAGAAAATGGCAGAGgtttgcacagctctattttattttttgtgttttctgctttgttaaattgctttatttgtttgtattggcacttgattgagctttgaattgttcgaactag
||| ||||||||||| |||||||| || || || || || ||||| ||||| |||||| | |||||||| || ||||| ||||| || | |||||| |||||    | |     |  || ||  ||| |    |     ||| || |   | ||                                              
GAAAATGATGCACAAGTATATTGGATCGGACGTCACTTCCATGGTGACACTGCCAGTTTTGATTTTTGAGCCCATGACGATGCTCCAAAGAATGGCCGAGgtaaagaaa-----aactttttccttgagg---caaagctgtaaattctatctacag-------------------------------------------

upper sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ08612 (Selaginella moellendorffii), 5'ss of exon 3
GAAGATGATGCACAAATATATTGGCTCAGATGTAACATCAATGGTAACACTACCAGTTATTATTTTTGAACCAATGACTATGCTTCAGAAAATGGCAGAGgtttgcacagctctattttattttttgtgttttctgctttgttaaattgctttatttgtttgtattggcacttgattgagctttgaattgttcgaactag
||| ||||||||||| |||||||| || || || || || ||||| ||||| |||||| | |||||||| || ||||| ||||| || | |||||| |||||    | ||    | ||| |  ||  ||    |     ||| || |   | ||                                              
GAAAATGATGCACAAGTATATTGGATCGGACGTCACTTCCATGGTGACACTGCCAGTTTTGATTTTTGAGCCCATGACGATGCTCCAAAGAATGGCCGAGgt----aaagaaaaactttttccttgatg----caaagctgtaaattctatctacag-------------------------------------------