Sequence
atgc intronic sequence ATGC exonic sequenceTATCAATGCTTGCTTAGCACCTCTATATTCTGTAGAAGGGATGCACGTGATTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTTCAGgtgacagatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaatttacccttgtaatctcttcag
Basic information
species | Glycine max |
transcript | GLYMA15G03870.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G03870.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G34900.1 (Arabidopsis thaliana), 5'ss of exon 3
TATCAATGCTTGCTTAGCACCTCTATATTCTGTAGAAGGGATGCACGTGATTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTTCAGgtgaca----gatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaatttacccttgtaatctcttcag
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TGTCAACGCTTGCCTAGCACCTCTCTACTCTGTAGAAGGGATGCATGTAATATCCATTGAAGGAGTTGGTCATCGGAAACTTGGCTTGCACCCTCTTCAGgtggggttttacttcttccagattttttttttctcatttctgcgatcctaattctccctatttctctcag--------------------------------------------------------------------------------------------------------------------------------
upper sequence: GLYMA15G03870.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G34890.1 (Arabidopsis thaliana), 5'ss of exon 3
TATCAATGCTTGCTTAGCACCTCTATATTCTGTAGAAGGGATGCACGTGATTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTTCAGgtgacagatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaatttacccttgtaatctcttcag
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TGTCAACGCTTGCCTAGCACCTCTCTATTCTGTAGAAGGGATGCATGTAATATCCATTGAGGGACTTGGGCATCGCAAACTTGGCTTGCACCCTGTCCAGgtaagatttactt---ctctcaggttctat--ttcttct-tattt--tgcg-gagattcttttgtca--ctgttatgatcttgattctctcag-----------------------------------------------------------------------------------------------------
upper sequence: GLYMA15G03870.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g02030.t01 (Vitis vinifera), 5'ss of exon 3
TATCAATGCTTGCTTAGCACCTCTATATTCTGTAGAAGGGATGCACGTGATTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTTCAGgtgacagatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaatttacccttgtaatctcttcag
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TGTCAATGCATGCTTAGCCCCTCTGTATTCTGTCGAAGGGATGCATGTAATTACAGTGGAGGGGATTGGAAACCGCAGAAATGGATTGCATCCAATTCAGgtattata----ccaactttcacatttttcc---tttgatta--tgatgttagctgtccttattggtaactggtactgctt--cttctcttactgccatgttttcaatctt-----------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213591492|gb|DB955756.1|DB955756EST: TTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTTCAG GAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGT
genomic: TTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTTCAGgtgacagatg ... atctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATCAATGCTTGCTTAGCACCTCTATATTCTGTAGAAGGGATGCACGTGATTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTTCAGgtgacagatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaatttacccttgtaatctcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC