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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACAACATGTCTTATTGGGCACCAAGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttttgttgcattttttttattgatttttgtcatattcaagactgttattttggacaattatttcttttaggaatattttgttatttcctatttct...

Basic information

species Glycine max
transcript GLYMA15G03190.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G829738_T01 (Zea mays), 5'ss of exon 3
GTAACAACATGTCTTATTGGGCACCAAGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttttgttgcattttttttattgatttttgtcatattcaagactgttattttggacaattatttcttttaggaatattttgttatttcctatttct--------------------------------------
||   ||||   ||||||||||| || ||||| || || ||||| || || || |||  ||||||||| || |||||||||||| | |||||||| |||||||    |   |   |||||||| |   ||  || ||||      |    |  |||  ||| || | | ||| || |   ||||  |   |  ||||                                         
GTTCTAACACAACTTATTGGGCATCATGTGGACGTGCATGTGAATAACGGCTCTATAATCTCTGGAATTTTCCATGCAACAAACCCTGACAAAGACTTTGgtactcctctat---ttttttttctcagttcctgacatagcttttatgaatccttt--acagttttctatttgagcaccgtttttgtgaattgtattggcatattcattcaatacttaacttcaagattctcctacag

upper sequence: GLYMA15G03190.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g01560.t01 (Vitis vinifera), 5'ss of exon 3
GTAACAACATGTCTTATTGGGCACCAAGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttttgttgcattttttttattgatttttg--tcata-ttcaagactgttattttggacaattatttcttttaggaata-ttttgttatttcctatttct----------------------------------------
 ||||||||||| ||||||| |  |  |||||||||||||| ||||||||||| |||   |||||||||||||||||||||||| | ||||| ||||| |||||| ||    |   ||     ||||    |||  ||||| ||    | || |    | |||  |  ||     |   |  | || |||| |   | ||||                                          
TTAACAACATGTTTTATTGGACTTCCCGTGGAAGTCCAGGTCAAAAATGGATCTATAATTTCTGGAATATTTCATGCAACAAACGCTGACAAGGATTTCGgtatggttcaa-gagattacacaattgtcccttgcatcataattttgtattggttcccttgaccttctttcaaaatccaagcaattctgttttcagccatttgctcataaaggttttagcattcactttgctcataacttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023990|gb|BM095024.1|BM095024
EST:     ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTG                         GAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGA
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttttg ... cttattatagGAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGA
EST: gi|192323551|gb|FK019022.1|FK019022
EST:     ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTG                         GAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGAGGAC
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttttg ... cttattatagGAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGAGGAC
EST: gi|11413014|gb|BF425034.1|BF425034
EST:     ATCCATATACTCTGGAATATTTCATGCAACANACACAGACAAAGATTNTG                         GAATCATTNTGANAATGGCTTGCTTAACAAAGGATGGTTCTTTACGAGGAC
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttttg ... cttattatagGAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGAGGAC