1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGTGAGGGCAAGGAATGTGAGGAATTCTCCAGAAGGGAAAGCTGTGCAGAAATTACTTGATGAGCATCGCAACCAAGCTGATCCTTTTAATCAAATTGAGgtggtatcataatttgactcaagataatctgacattctgtattgatcattctgagttaacatattaggagatgctaacatgttgcatgttttgccatgttgctatcag
species | Glycine max |
transcript | GLYMA15G02940.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AATTACTTGATGAGCATCGCAACCAAGCTGATCCTTTTAATCAAATTGAG CAAGGATGGTGTGATATTCCTGGAAEST: gi|208044653|gb|GD841077.1|GD841077
genomic: AATTACTTGATGAGCATCGCAACCAAGCTGATCCTTTTAATCAAATTGAGgtggtatcat ... ttgctatcagCAAGGATGGTGTGATATTCCTGGAA
EST: CATCGCAACCAAGCTGATCCTTTTAATCAAATTGAG CAAGGATGGTGTGATATTCCTGGAACTGTGGATGAAGTTAAAGCAAAGCTAEST: gi|7685627|gb|AW756275.1|AW756275
genomic: CATCGCAACCAAGCTGATCCTTTTAATCAAATTGAGgtggtatcat ... ttgctatcagCAAGGATGGTGTGATATTCCTGGAACTGTGGATGAAGTTAAAGCAAAGCTA
EST: AATTACTTGATGAGCATCGCAACCAAGCTGATCCTTTTAATCAAATTGAG CAAGGATGGTGTGATATTCCTGGAACTGTGGATGAAGTTAAAGEST: gi|208254790|gb|GE057384.1|GE057384
genomic: AATTACTTGATGAGCATCGCAACCAAGCTGATCCTTTTAATCAAATTGAGgtggtatcat ... ttgctatcagCAAGGATGGTGTGATATTCCTGGAACTGTGGATGAAGTTAAAG
EST: AATTACTTGATGAGCATCGCAACCAAGCTGATCCTTTTAANCAAATTGAG CAAGGATGGTGTGATATTCCTGGAAEST: gi|207776587|gb|GD747459.1|GD747459
genomic: AATTACTTGATGAGCATCGCAACCAAGCTGATCCTTTTAATCAAATTGAGgtggtatcat ... ttgctatcagCAAGGATGGTGTGATATTCCTGGAA
EST: ATTACTTGATGAGCATCGCAACCAAGCTGATCCTTTTAAATCAAATTGAG CAAGGATGGTGTGATATTCCTGGAA
genomic: ATTACTTGATGAGCATCGCAACCAAGCTGATCCTTTTAA-TCAAATTGAGgtggtatcat ... ttgctatcagCAAGGATGGTGTGATATTCCTGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGAGGGCAAGGAATGTGAGGAATTCTCCAGAAGGGAAAGCTGTGCAGAAATTACTTGATGAGCATCGCAACCAAGCTGATCCTTTTAATCAAATTGAGgtggtatcataatttgactcaagataatctgacattctgtattgatcattctgagttaacatattaggagatgctaacatgttgcatgttttgccatgttgctatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT