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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAGgtaatcatcatttggtcagtaatgttgcaccaacatcctatgggtcagaagagtcaatatttataaatgtatgatcattgtttcag

Basic information

species Glycine max
transcript GLYMA15G02640.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 3
CATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAGgtaatcatcatttgg-------tcagtaatgttg-caccaacatcctatgggtcagaagag--tcaatatttataaatgtatgat--cattgtttcag--
 |  |    ||  | || ||  | |||||    || ||  | ||||  ||||||||||| ||||||||||| || || |||||||||||||| || ||||||      | ||         | | | ||  || | ||      | |||  |||||      |  |||| |   |  ||  ||    ||  |||     
-AGCGCCAGTC--GGAGTGAACTTGAGAGACAAGATTACCCGATTGCCAGGCATCCTGAATTCCGTTACAAGACTGAATTTCAGAGTCATGAACCTGAGgtatgtgaaacttaaaatggttttaattatagtgtctcccctggtccatgaatcagagtgacatatatatctgccacagttggactgtataattttgata

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 3
CATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAGgtaatcatcatttggtcagtaatgttgcaccaacatcctatgggtcagaagagtcaatatttataaatgtatgatcattgtttcag
     ||  |  ||||  ||    ||||   | || |||||  || | ||||||||||| || || |||||||| |||||||| || ||||| |||||||||      |   |   |    || |     ||   ||| |   |        | ||   | ||   ||| |  ||||    | ||
---AATGCCTGTAGAAAAGAGGCTGAGAAAGTTGATTATTCCGTTAGCAGGCATCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCATGAACCAGAGgtatattgtacaagactaac--tgcttagtgaagtacctgtaatttctgttgtttaac--taatt--tgtcttgtcatgcgattag

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 3
CATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAGgta-atcatcatttggtcagtaatgttgcaccaacatcctatgggtcagaagagtcaat--atttataaatgtatgatcattgtttcag-----------
     ||  |   || | ||  | ||||||   || |||  | ||  |||||||||||||||||||||||| || || |||||||||||||| || ||||||  |     ||   |  |  ||    |   |  | |   | | |||  || ||||||  | || |           || ||   ||            
---AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAGgtacgtgggtcttaaattggcgatagaccgatagtaacaatttgttcatgagtgtcaattgacttcttgtgactgaggcactgagccatatctagcttgg

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 3
CATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAGgtaatcatcatttggtcagtaatgttgcaccaacatcctatgggtcagaag--agtcaatatttataaatgtatgatcattgtttcag--
     ||  || ||||  |||   ||||     || ||||||||  | |||||||||||||| || |||||||| |||||||| || |||||||||||||||    |  | | |  || | ||||  |     ||  | ||  | |  |   | |  | ||||   || ||    | ||| ||  |   
---CATGCCTCTAGAAAAGATGCTGAGAAAGCTGATTATTCTATCAGCAGGCATCCTGAGTTTCGCTACAAAACTGAGTTTCAAAGCCATGAGCCAGAGgta----tattctcgcaagcattgtt-tagtggtattatttgtcttatgaattacttgaaatttgacaaagtgatgttattattgaatag

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 5
CATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAGgtaatcatcatttggtcagtaatgttgcaccaacatcctatgggtcagaagagtcaa-tatttataaatgtatgatcattgttt--cag
    ||||| | ||||| ||  | ||       || ||| | | ||  |||||||| ||||| ||||| ||||||||||||||||||||||| || |||||| |    ||||  || ||  | || |     || |   | ||  | |    | |  | | | |  |||    ||| ||||||  |||
AGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTAT-CCACTG--AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAGgtatttg--atttactctgttttctt-cttactcagctatttggctataccttttatctgtcttttcatgctctatccttgtttaccag

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G17720.2 (Arabidopsis thaliana), 5'ss of exon 3
CATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAGgta-atcatcatttggtcagtaatgttgcaccaacatcctatgg-gtcagaagagtcaatatttataaatgtatgatcat-tgtttcag
||||| || || || | |||| | |||  || ||| ||  |  ||   |||||||||||||| || || |||||||| |||||||||||||| ||||||||| || |  | ||  |||  |   || |||  ||     || | ||     |||  | |   ||    ||  |    || ||||||||
CATGGAGGGTCCAGGAAGGATCTTGAGCAGACGGATTACCCAGTT---AGGCATCCTGAGTTTCGATATAAAACAGAATTTCAGAGTCATGAACCAGAGgtacattaaaactta-tcaccag-atttcacttacgagtaattgtgttccttgagctactcaataagcttgcttttcaatctgtttcag

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 3
CATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAGgtaat-----catcatttg-----gtcagtaatgttgcaccaacatcctatgggtcagaagagtcaatatttataaatgtatgat-cattgtttcag------------
||||| ||||||||||||||| | ||||||||||||||  | |||   |||||||| || || ||||| ||||| ||||||||||| ||||| || |||||| |     ||||| ||      | | | | | |     || || ||| ||      | |     | || | | |||  |||   ||||| ||               
CATGGAGGATCAAGAAGGGATCTTGAGAGGATGGACTACCCAATT---AGGCATCCCGAATTTCGTTATAAAACTGAGTTTCAGAGCCATGAACCTGAGgtatttctttcatcagttactcctgcctgaagtttgtttgcaccaccctttgctcactaggctctgaaatgttttaattgatgccacattgcttattctctgtgctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258666|gb|BG881574.1|BG881574
EST:     GGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAG                         TTTGACTATCTTAAGAGTTTGGAGATTGAAGAGAAAATCAACAAAATCAGA
genomic: GGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAGgtaatcatca ... attgtttcagTTTGACTATCTTAAGAGTTTGGAGATTGAAGAGAAAATCAACAAAATCAGA
EST: gi|24205994|gb|BU965247.1|BU965247
EST:     GGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAG                         TTTGACTATCTTAAGAGTTTGGAGATTGAAGAGAAAATCAACAAAATCAGA
genomic: GGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAGgtaatcatca ... attgtttcagTTTGACTATCTTAAGAGTTTGGAGATTGAAGAGAAAATCAACAAAATCAGA