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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGTGTTCCTATAGGGAGAAAAGTGGACCTCAATGCCTATGACAGCTATGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttgtgacactctaattcaatgatggtttattctatagtataaatcatccttgcgtggaccatttttttgtatattacttttgattgatagcta...

Basic information

species Glycine max
transcript GLYMA15G02350.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11413713|gb|BF425724.1|BF425724
EST:     CGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGA
genomic: CGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGA
EST: gi|193692550|gb|FK627669.1|FK627669
EST:     TGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGA
genomic: TGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGA
EST: gi|208133124|gb|GD931729.1|GD931729
EST:     TGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGG
genomic: TGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGG
EST: gi|298178211|gb|HO023946.1|HO023946
EST:     TGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGA
genomic: TGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGA
EST: gi|192309095|gb|FG999056.1|FG999056
EST:     TG-AAATCTCTCTTCCGCCGCGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGA
genomic: TGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGA
EST: gi|298178855|gb|HO024590.1|HO024590
EST:     TGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGA
genomic: TGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGA
EST: gi|19269416|gb|BM885672.1|BM885672
EST:     TGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGA
genomic: TGAAAATCTCTCTTCCGCCGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGA