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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagttatcactttttatataatacatatatgccagtgtaatgtttgcattgagttgttaaaaattactcatgtcatggctgtgcacattctaatta...

Basic information

species Glycine max
transcript GLYMA15G01360.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400645|gb|BM177427.1|BM177427
EST:     GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|254322314|gb|GR837728.1|GR837728
EST:     GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|7589397|gb|AW705172.1|AW705172
EST:     GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|10253522|gb|BE821288.1|BE821288
EST:     GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|192320916|gb|FK013110.1|FK013110
EST:     GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|192333618|gb|FK025435.1|FK025435
EST:     GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGGTGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|298195945|gb|HO044336.1|HO044336
EST:     GAAGGGATATTCTTGAAATAAACCGTCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|21677694|gb|BQ630045.1|BQ630045
EST:     GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|254322313|gb|GR837727.1|GR837727
EST:     GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|33388406|gb|CA851613.1|CA851613
EST:     GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCCGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|15814678|gb|BI786953.1|BI786953
EST:     GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|192333647|gb|FK025436.1|FK025436
EST:     GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGGTGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|14991330|gb|BI317003.1|BI317003
EST:     CTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
genomic: CTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC
EST: gi|5677887|gb|AI939017.1|AI939017
EST:     GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAG                         GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGATGGATGC
genomic: GAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGgttagagtta ... tggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGC