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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGCTTTTGAGTTTGGGAAGACACATGTAGTGAGGCCAAAAGGAAAACACCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGgtatgcatgtcatcatgtcttcaatattgtcataggtcattctatcatttccacaattatcagttcattcttgtaccggttgttctatattcacttttcc...

Basic information

species Glycine max
transcript GLYMA15G01350.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01350.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g09540.1 (Oryza sativa), 5'ss of exon 2
GAAGAGCTTTTGAGTTTGGGAAGACACATGTAGTGAGGCCAAAAGGAAAACACCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGgtat-gcatgtcatcatgtcttcaatattgtcataggtcattctatcatttccacaattatcagttcattcttgtaccggttgttctatattc-acttttcc
|  |     | |||| ||||| |||  || ||||||||||||| ||||  ||||||||||| || || ||||| |||||||| ||||| ||||||   ||||||   ||     |  |  |   |||  | ||  |    |||  ||    |     || |    |||| ||  | |  |   |  ||  ||| || |||  
GTCGGAGAGTCGAGTATGGGAGGACCTATATAGTGAGGCCAAAGGGAAGGCACCAAGCCACCATTGTGTGGCTCCATGGTCTAGGTGACAATGGTGCAAGgtattatatagtggctagcttgatatacagccactgcctcttcgttccaaactttgcttgtttactcatgctccttcaagc-atggtaccttctacctttt-

upper sequence: GLYMA15G01350.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G52700.1 (Arabidopsis thaliana), 5'ss of exon 2
GAAGAGCTTTTGAGTTTGGGAAGACACATGTAGTGAGGCCAAAAGGAAAACACCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGgt-atgcatgtcatcatgtcttcaatattgtcataggtcattctatcatttccacaattatcagttcat-tcttgtaccggttgttctatattcacttttcc
 ||| |  | ||| ||||| | |||  |||| |||||||| |||||||| || ||||||||| |||| ||||| |||||||||||||| ||||| |  |||| |  |   |||    |   |    ||| | ||   |  || |    | |  | |      |  | |  ||||| | |      ||     |     ||  
CAAGGGGATATGAATTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCATCAAGCCACTCTAGTCTGGCTTCATGGTCTTGGTGACAATGGCTCTAGgttacactcttcacatggctctttcgattattatgctttttttttgtgtcttaaaagaatcaaactaacatcttgaagcataaactcctccgtggtgctt--

upper sequence: GLYMA15G01350.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g06010.t01 (Vitis vinifera), 5'ss of exon 3
GAAGAGCTTTTGAGTTTGGGAAGACACATGTAGTGAGGCCAAAAGGAAAACACCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGgtatgcatgtcatcatgtcttcaatattgtcataggtcattctatcatttcc-acaatta--tcagttcattcttgta-ccggttgttctatattcacttttcc
||||  | ||||||||||| | ||||||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |  ||||||   |||     | | || |  ||||       || ||  | ||||| | |  |||   | |   ||||||||||    |  |||| ||    ||  ||  
GAAGGACCTTTGAGTTTGGAAGGACACATGTGGTGAGGCCCAAGGGAAAACACCAGGCCACAATAGTTTGGCTACATGGCCTTGGTGACAATGGCTCAAGgtat---tgttgctgt-tttttaccattgcttgcattcttttgaacattttctatgatttctttatagcattcttgtaattagaagttcaatgggtaccatttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717358|gb|BW659048.1|BW659048
EST:     CACCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAG                         CTCATCTCAGCTCCTGGAATCCCTTCCACTTCCAAAT
genomic: CACCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGgtatgcatgt ... tttgttgcagCTCATCTCAGCTCCTGGAATCCCTTCCACTTCCAAAT