Sequence
atgc intronic sequence ATGC exonic sequenceGGAGGTTGGAGATTTTCTTCAAAGACGAAAGCAGACACGGGGTTTCCATAGTTGATCTCTACGAGCTTGTTCAGCACGCTGGAAATATATTGCCTAGACTgtaagcgttttttgcgcccaattttttttttttattgttgcttaccaaatgccaatgttcctgcttatgatttgaacttaatttactgccag
Basic information
species | Glycine max |
transcript | GLYMA14G40270.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g14680.t01 (Vitis vinifera), 5'ss of exon 3
GGAGGTTGGAGATTTTCTTCAAAGACGAAAGCAGACACGGGGTTTCCATAGTTGATCTCTACGAGCTTGTTCAGCACGCTGGAAATATATTGCCTAGACTgtaagcgt-----tttttgcgcccaattttttttttttattgttgcttaccaaatgccaatgttcctgcttatgatttgaacttaatttactg---ccag
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GGAAGCTGGAGATATTCTTTAAGGACGAAAGCAGGCATGGTTGTTCTATCATTGATCTGTATGAGCTAGTTCAGCATGCCGGAAACATATTGCCTAGACTgtaagtttgaagactgaatcaattaattctccaatcgtgtcttcttcttccaattgctactttatgtgttactaaattggtgcaaatccatcaagttcaa
upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S456_14V6.1 (Physcomitrella patens), 5'ss of exon 3
GGAGGTTGGAGATTTTCTTCAAAGACGAAAGCAGACACGGGGTTTCCATAGTTGATCTCTACGAGCTTGTTCAGCACGCTGGAAATATATTGCCTAGACTgtaagcgttttttgcgcccaattttttttttttattgttgcttaccaaatgccaatgttcctgcttatgatttgaacttaatttactgccag-------------
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AGCGATTGGAAATTTTCTTTCAAGATGAAACCAAGAGAGGTCGCACACCTGCAGATTTATACGAGCTTGTTCAGCATGCTGGAAACATATTGCCTCGTTTgtaagtatgctgatcatt---tttcaggtgtaggttcgaagatactgagcacacagattggtg--aaggactggggagtagatcattgttagtggatattttaat
upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ27365 (Selaginella moellendorffii), 5'ss of exon 3
GGAGGTTGGAGATTTTCTTCAAAGACGAAAGCAGACACGGGGTTTCCATAGTTGATCTCTACGAGCTTGTTCAGCACGCTGGAAATATATTGCCTAGACTgtaagcgttttttgcgcccaattttttttttttattgttgcttaccaaatgccaatgttcctgcttatgatttgaacttaatttactgccag
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GGAAGCTCGAGTTCTTCTTCAAGGACGAGACGAAAAGAGGCCGCACGAATGCCGATCTCTACGAGCTTGTTCAGCACGCTGGCAACATCTTACCGAGGCTgtatgctctttttctttttccactctttctttcatt----ctcctgagacgtcgttcgtttctttcag------------------------
upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ33136 (Selaginella moellendorffii), 5'ss of exon 3
GGAGGTTGGAGATTTTCTTCAAAGACGAAAGCAGACACGGGGTTTCCATAGTTGATCTCTACGAGCTTGTTCAGCACGCTGGAAATATATTGCCTAGACTgtaagcgttttttgcgcccaattttttttttttattgttgcttaccaaatgccaatgttcctgcttatgatttgaacttaatttactgccag
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GGAAGCTCGAGTTCTTCTTCAAGGACGAGACGAAAAGAGGCCGCACGAATGCCGATCTCTACGAGCTTGTTCAGCACGCTGGCAACATCTTACCGAGGCTgtatgctctttttctttttctactctttctttcatt----ctcctgagacgtcgttcgtttctttcag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209717785|gb|BW666058.1|BW666058EST: GTTGATCTCTACGAGCTTGTTCAGCACGCTG-AAATATATTGCCTAGACT GTATCTCCTTTGCACGGTAGGATCTGTTTATCTCAGATGCAAGGATGCTCC
genomic: GTTGATCTCTACGAGCTTGTTCAGCACGCTGGAAATATATTGCCTAGACTgtaagcgttt ... ttactgccagGTATCTCCTTTGCACGGTAGGATCTGTTTATCTCAGATGCAAGGATGCTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGGTTGGAGATTTTCTTCAAAGACGAAAGCAGACACGGGGTTTCCATAGTTGATCTCTACGAGCTTGTTCAGCACGCTGGAAATATATTGCCTAGACTgtaagcgttttttgcgcccaattttttttttttattgttgcttaccaaatgccaatgttcctgcttatgatttgaacttaatttactgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA