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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatctagctttgctttttgattgaatcttgaattgttgcatatttgatgattgtgagcatgtttgcctttgtaattgaaatataattcttggtgttaaacgcag

Basic information

species Glycine max
transcript GLYMA14G39540.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G39540.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G089454_T01 (Zea mays), 5'ss of exon 3
ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatctagctttgcttt-ttgattgaatcttgaat---tgttgcatatttgatgattgtgagcatgtttgcctttgtaattgaaatataattcttggtgttaaacgcag
|| || ||||||||||||||||||||||||||||| ||||  ||      |||| || ||   ||| ||||    | |||  ||| | ||     | |  ||| |   || || ||  |                           
ACAGGTGGCTACAGTGAGGACATGATTCCAACTgtatgtacatacaaacactttctttatgttatcctgaacaaatcttggttatctaattcacctaaa-atgctcatctgtgaaacag---------------------------

upper sequence: GLYMA14G39540.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G089454_T03 (Zea mays), 5'ss of exon 2
-------------------------------------------------------------------ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatctagctttgcttt-ttgattgaatcttgaat---tgttgcatatttgatgattgtgagcatgtttgcctttgtaattgaaatataattcttggtgttaaacgcag
                                                                   || || ||||||||||||||||||||||||||||| ||||  ||      |||| || ||   ||| ||||    | |||  ||| | ||     | |  ||| |   || || ||  |                           
TCAGTCAAGATACATTACCATGTTATCTGGTGTTTTGATTTTAATTCATGGCTTCTGTGCTTTGCAGACAGGTGGCTACAGTGAGGACATGATTCCAACTgtatgtacatacaaacactttctttatgttatcctgaacaaatcttggttatctaattcacctaaa-atgctcatctgtgaaacag---------------------------

upper sequence: GLYMA14G39540.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G171060_T02 (Zea mays), 5'ss of exon 4
ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatctagctttgcttt-ttgattgaatcttgaattgttgcatatttgatgattgtgagcatgtttgcctttgtaattgaaatataattcttggtgttaaacgcag
|| || |||||||||||||||||||||||||| || ||||  ||  |   |||| || || |  || | ||        | | | ||    |||| |     ||||  | |    |||| |                      
ACAGGTGGCTACAGTGAGGACATGATTCCAACGgtatgtacatacatacactttctttatggtgtccttaacaaaaatctttgttatctaagtgatctgaaatgcccatctg--cgaaacag---------------------

upper sequence: GLYMA14G39540.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0006g01090.t01 (Vitis vinifera), 5'ss of exon 4
ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatctagctttgctttttgattgaatcttgaattgttgcatatttgatgattgtgagcatgtttgcctttgtaattgaaatataattcttggtgttaa-acgcag
|| || |||||||||||||||||||||||||||||  ||||||   |  |   ||  ||||||| |   |||||          |||||  | ||  |  ||   | | | ||         ||||||||   | | |  |||
ACAGGAGGCTACAGTGAGGACATGATTCCAACTgtaggtatctttatccggggttaaattgaatttcacattgt----------atgatccttag--ttcttagatatcttatcaggg----attcttggctctgacaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208331608|gb|GE132321.1|GE132321
EST:     ACTGGGGGCTACAGTGAGGACATGATTCCAACT                         GTTGGTTTCAACATGAGAAAAGTGACTAAGGGAAATGTCACAATAAAGCTT
genomic: ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatct ... ttaaacgcagGTTGGGTTCAACATGAGAAAAGTGACTAAGGGAAATGTCACAATAAAGCTT