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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCCTTGTTTTATTGTGCTCTGCTTGCAGGGCTTCTCCATCGATTCCCTGTTAGTTTTTCTCAGgtaagtgtgatttccttccccctctcaatttcaattttcttaggccttcttatccaacggcttatgttgtctacacattttaaaacagcatttatttgagaaattgaatgctatgtgcag

Basic information

species Glycine max
transcript GLYMA14G37090.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37090.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G58870.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAGCCTTGTTTTATTGTGCTCTGCTTGCAGGGCTTCTCCATCGATTCCCTGTTAGTTTTTCTCAGgtaagtgtgatttccttccccctctcaatttcaattttcttaggcctt-----cttatccaacggcttatgttgtctacacattttaaaacagcatttatttgagaaattgaatgctatgtgcag
||||   |||| ||   |||  ||||||||||||||||||| ||||| |||||||  ||||| |||||  |  |  |     | ||    |    ||   |    | ||||| |     ||| ||  |     | ||  || ||||||                                           
ATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAGgtttgcatattcatgataccgtaatgtggttgtttaagttaaggccatgtgcacttttcttaaaagctgtgaggtatacacag------------------------------------------

upper sequence: GLYMA14G37090.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g06120.t01 (Vitis vinifera), 5'ss of exon 2
ATAGCCTTGTTTTATTGTGCTCTGCTTGCAGGGCTTCTCCATCGATTCCCTGTTAGTTTTTCTCAGgtaagtgtgatttccttccccctctcaatttcaattttcttaggccttcttatccaacggcttatgtt-gtctacacattttaaaacagcatttatttgagaaattgaatgctatgtgcag
|| || ||||| |||  |||| |||||||||| |||||||| ||||| ||||| || |||||||||||  || ||| |   || |     |  |  |  |    || | ||    ||           |  ||  ||  |  | |    | ||||                                
ATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCTGTAAGCTTTTCTCAGgtgtgtatgagtgtgttgctttcatttaccttgaaa--ctaatgctaatttgcaaggaattctgagtgagtgaatgcctacctacacag--------------------------------