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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCATTGAAAACGTCAAGGGTTGCACTGACAAAGTTGAAAACGGTGATAAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatgccctatccctatgctattgtcaattgtttccaattagtgtacactaattttggataaacttttcattaagcacttacaggagaacaaagt...

Basic information

species Glycine max
transcript GLYMA14G36610.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714894|gb|BW682059.1|BW682059
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|254347199|gb|GR856869.1|GR856869
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|10847409|gb|BF070096.1|BF070096
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|4283221|gb|AI440629.1|AI440629
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|151407616|gb|EV277431.1|EV277431
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|27426743|gb|CA938263.1|CA938263
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|151406931|gb|EV276746.1|EV276746
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|58017863|gb|CX704605.1|CX704605
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|192331092|gb|FK020312.1|FK020312
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|298171750|gb|HO021342.1|HO021342
EST:     AAGGTCTCTCTTGGAGCTGAAATCACCATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCAAATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|58017298|gb|CX704040.1|CX704040
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|209706270|gb|BW676285.1|BW676285
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|254333892|gb|GR848810.1|GR848810
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|151411907|gb|EV281718.1|EV281718
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|58021215|gb|CX707957.1|CX707957
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|298171455|gb|HO016487.1|HO016487
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCGTATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|151402755|gb|EV272568.1|EV272568
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|298196527|gb|HO041270.1|HO041270
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|151406677|gb|EV276492.1|EV276492
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|254334579|gb|GR844364.1|GR844364
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: gi|254335321|gb|GR846818.1|GR846818
EST:     AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG                         CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCCATTGAAAACGTCAAGGGTTGCACTGACAAAGTTGAAAACGGTGATAAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatgccctatccctatgctattgtcaattgtttccaattagtgtacactaattttggataaacttttcattaagcacttacaggagaacaaagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctatcc