1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGGATAAAGCAGCTCAACGATCCTCTCGAGGCCATCGATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAGgtgaatccgagtttcattctacagtgctttgctttgctttgaattaataaataagctttccgattttatgcatgattgttgtttacggaagtttgtttgtacggaatttgtag
species | Glycine max |
transcript | GLYMA14G36280.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAG GGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAAEST: gi|298187285|gb|HO034434.1|HO034434
genomic: ATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAGgtgaatccga ... gaatttgtagGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA
EST: ATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAG GGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAAEST: gi|27426205|gb|CA937725.1|CA937725
genomic: ATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAGgtgaatccga ... gaatttgtagGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA
EST: GCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAG GGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAAEST: gi|209724640|gb|BW651425.1|BW651425
genomic: GCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAGgtgaatccga ... gaatttgtagGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA
EST: ATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAG GGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA
genomic: ATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAGgtgaatccga ... gaatttgtagGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATAAAGCAGCTCAACGATCCTCTCGAGGCCATCGATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAGgtgaatccgagtttcattctacagtgctttgctttgctttgaattaataaataagctttccgattttatgcatgattgttgtttacggaagtttgtttgtacggaatttgtag
- - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG