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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGACAGCTTTTTGGGTCAGCGTCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTTTATGGGATGGCTTTACTACTGATCgtaagttttaaacgtgttatatacttctcttctgaggcataattatttagaatatgctgcaagataccgtgaattgatgcagctctgtttagcattattctctgtacttattagtcaaaagtttttaattgtgatgacttataatttactgtgtgtgtag

Basic information

species Glycine max
transcript GLYMA14G26420.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G26420.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0098g01260.t01 (Vitis vinifera), 5'ss of exon 3
GTTGACAGCTTTTTGGGTCAGCGTCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTTTATGGGATGGCTTTACTACTGATCgtaagttttaaacgtgttatatacttct----cttctgaggcataattattta-gaatatgctgcaagataccgtgaattgatgcagctc--tgtttagcatt-attctctgtacttattagtcaaa--agtttttaattgtgatgacttat---aatttactgtg----tgtgtag
||||| |  |||||||||||||| || |||||||| ||||| ||  ||  ||||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||| ||  |    |||   |  | |    ||| ||   | |  || || |  |||    ||||   |    |       | ||  |   ||  |  |  | |||   |||||||  |||| |||  ||||   ||  ||    |||| |   |||||  |||       |||||
GTTGATACTTTTTTGGGTCAGCGCCGGACAACAGACCATGAAGCAATGGCAAACATGAAAACTGAGTTCATGGCTTTATGGGATGGTTTTACCACTGATCgtgagtattctatacattaagcaactataatccttgtggttctttctttttcacaaatgaagtgcatttttttcttgcccttttcaaataaatgcctctctctgattacttgtacttgctagttaaactagttggaaaaggtttccacttgtgacaatttgatgttgtttcatgtag

upper sequence: GLYMA14G26420.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ24487 (Selaginella moellendorffii), 5'ss of exon 3
GTTGACAGCTTTTTGGGTCAGCGTCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTTTATGGGATGGCTTTACTACTGATCgtaagttttaaacgtgttatatacttctcttctgaggcataattatttagaatatgctgcaagataccgtgaa-ttgatgcagctctgtttagcattattctctgtacttattagtcaaaagtttttaattgtgatgacttataatttactgtgtgtgtag
|| |||||||| ||||| |  ||  |    ||   ||| || |   ||    | ||||| ||||| || |||||| ||||||||||||| || ||||||||||||||    || |   | || ||| | |   || |  |     |||      |||||      |||  ||  || || |||                                                                              
GTGGACAGCTTCTTGGGACGTCGAGGAGTTACCAGTCACGAAGTCATGACTCAAATGAAGACTGAGTTTATGGCTCTATGGGATGGCTTGACCACTGATCgtaagttc---actt-caaaatccttttttctcgatgttttggctttt------tgctg------accacgagcttaatccag------------------------------------------------------------------------------

upper sequence: GLYMA14G26420.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ13213 (Selaginella moellendorffii), 5'ss of exon 3
GTTGACAGCTTTTTGGGTCAGCGTCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTTTATGGGATGGCTTTACTACTGATCgtaagttttaaacgtgttatatacttctcttctgaggcataattatttagaatatgctgcaagataccgtgaattgatgcagctctgtttagcattattctctgtacttattagtcaaaagtttttaattgtgatgacttataatttactgtgtgtgtag
|| |||||||| ||||| |  ||  |    ||   ||| || |   ||    | ||||| ||||| || |||||| ||||||||||||| || ||||||||||||||  |    |   | || ||| | |   || |  |     ||| |   |    |      | |  |                                                                                         
GTGGACAGCTTCTTGGGACGTCGAGGAGTTACCAGTCACGAAGTCATGACTCAAATGAAGACTGAGTTTATGGCTCTATGGGATGGCTTGACCACTGATCgtaagttcca---cttcaaaatccttttttctcgatgtttgggcttttggctgacaacgagcttaatccag-----------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105556|gb|BI893296.1|BI893296
EST:     AAACATGAAAACTGAATTCATGGCTTTATGGGATGGCTTTACTACTGATC                         AGAATGCTCAAGTTATGGTCCTTGCTGCAACTAATCGTCCTTCAGAACTTG
genomic: AAACATGAAAACTGAATTCATGGCTTTATGGGATGGCTTTACTACTGATCgtaagtttta ... gtgtgtgtagAGAATGCTCAAGTTATGGTCCTTGCTGCAACTAATCGTCCTTCAGAACTTG
EST: gi|298179688|gb|HO024903.1|HO024903
EST:     AAACATGAAAACTGAATTCATGGCTTTATGGGATGGCTTTACTACTGATC                         AGAATGCTCAAGTTATGGTCCTTGCTGCAACTAATCGTCCTTCAGAACTTG
genomic: AAACATGAAAACTGAATTCATGGCTTTATGGGATGGCTTTACTACTGATCgtaagtttta ... gtgtgtgtagAGAATGCTCAAGTTATGGTCCTTGCTGCAACTAATCGTCCTTCAGAACTTG