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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAGCTGCAGAGAGGTGGTTACATCACATGCAACATGCATTAGACAGTACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttctaccccaaggtcccacttcacggaaaatggttgttcatgataacattgagtcattgactgtactcttgtttttcag

Basic information

species Glycine max
transcript GLYMA14G20380.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G20380.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g04210.t01 (Vitis vinifera), 5'ss of exon 3
ATCAAGCTGCAGAGAGGTGGTTACATCACATGCAACATGCATTAGACAGTACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttatttt-ctaccccaaggtcccacttcacggaaaat-ggttgttcatgataacattgagtcattgactgtactcttgtttttcag-------------------------------------
| |||||||| ||||||||||| |||||||||||||| ||| | || |||   ||||| || ||||  || ||||| |||||||||||||| ||||||||||  |||   || ||||     || | ||  |     || ||||| |  |  | | |||||  | |  || | |   ||  |||  |                                      
ACCAAGCTGCGGAGAGGTGGTTGCATCACATGCAACAAGCACTGGATAGTGTCACAGAAATTGATGCAGATTCAAAAACCAAAATGATGAATTTTTTCAGgtaaattaaactcccccccccccctaattagcctctcattggttgct--ttctca-attgatacctaaacagcatctttcatttcaaaattagaacacattgcatatctggttttgtttttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176011|gb|HO015416.1|HO015416
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|151411791|gb|EV281602.1|EV281602
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|298180166|gb|HO025381.1|HO025381
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|192333050|gb|FK024699.1|FK024699
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|192310472|gb|FG999187.1|FG999187
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|298188951|gb|HO035644.1|HO035644
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|151410942|gb|EV280757.1|EV280757
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|58022773|gb|CX709514.1|CX709514
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|192300805|gb|FG989717.1|FG989717
EST:     ACTACAGGGATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|213587367|gb|DB982790.1|DB982790
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCCG                         GGACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|209710293|gb|BW676355.1|BW676355
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|192310471|gb|FG999186.1|FG999186
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|192317177|gb|FK009778.1|FK009778
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAGACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|192322320|gb|FK014561.1|FK014561
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|208246171|gb|GE045225.1|GE045225
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|298178491|gb|HO024226.1|HO024226
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|209707693|gb|BW676672.1|BW676672
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|213618183|gb|DB965340.1|DB965340
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|298170523|gb|HO019147.1|HO019147
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|38193212|gb|CF922418.1|CF922418
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|192303821|gb|FG998173.1|FG998173
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|192332624|gb|FK025729.1|FK025729
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATANNNNNNNGGTGGCTGGAGATGAGCTAAAGAATCAAAACC
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTT-GGTGGCTGGAGATGAGCTAAAGAATCAAAACC
EST: gi|298167358|gb|HO012621.1|HO012621
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAGTGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGGTGAGCT
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCT
EST: gi|58021991|gb|CX708732.1|CX708732
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|298172547|gb|HO019587.1|HO019587
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|151404331|gb|EV274141.1|EV274141
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
EST: gi|298191186|gb|HO038665.1|HO038665
EST:     ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCT
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCT
EST: gi|298196640|gb|HO041383.1|HO041383
EST:     ACTACAGATATAGATGATGGCTCAAAGACCAAAATGATGAACTTTTTCAG                         GCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA
genomic: ACTACAGATATAGATGATGACTCAAAGACCAAAATGATGAACTTTTTCAGgtttattttc ... tgtttttcagGCACACTGCATATTTTTTGGTGGCTGGAGATGAGCTAAAGAATCAAAACCA