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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAGgtgtgtaatttcttacctatgacatagcaccatgatcccttagcctgatgttctccaacttgataaatcccgagaataactattttttcccctcctgccaaactgtttttctccacag

Basic information

species Glycine max
transcript GLYMA14G12220.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G12220.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 4
GCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAGgtgtgtaatttcttacctatgacatagcaccatgatcccttagcctgatgttctccaacttgataaatcccg-agaataactattttttcccctcctgccaaactgtttttctccacag
| ||||| ||||| ||||| ||||| ||||| |||||||| || || || ||  ||||||| |||||||| ||||| ||||| |||| | ||||||||||||      || | |||| | | || |            |||||| |||| |     | |  ||| | |  | |   |  ||| || |  |  |         ||| |  ||  | |||
GACATGGAGGTGCACGTGCAGCTGAATATGTGAAGCAAAATCTCTTCAGTAACCTGATCAGGCATCCAAAGTTCATCTCTGATACCACAGCTGCAATAGgtgc-----ttttcacctttaatattg------------ttagccagatgattc---aataaatagacctagcaaggtgcctaattctgactttttcatttgcctgctcctcatctcag

upper sequence: GLYMA14G12220.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 4
GCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAGgtgtgtaatttcttacctatgaca-tagcaccatgatcccttagcctgatgttctccaacttgataaatcccgagaataactattttttcccctcctgccaaactgtttttctccacag
| ||||| |||||||| || ||||| ||||| || |||||||| ||||| ||||||||||| |||||||| ||||||||||| || ||||| || |||||| |||   ||| |  || || || ||    ||   | |  |||||||      |   |  || |  |  |  |  |  ||| | ||      ||||    |  ||             
GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgt---ttcctgactgtgccagtaatgtcact-ttctatagcctg------tatgaagtg-ttcactctaaatactactgtcttaaattatcctctgtacatgcag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502191|gb|AW203564.1|AW203564
EST:     CAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAG                         CTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATC
genomic: CAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAGgtgtgtaatt ... ttctccacagCTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATC
EST: gi|120496388|gb|EH224555.1|EH224555
EST:     CAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAG                         CTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATC
genomic: CAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAGgtgtgtaatt ... ttctccacagCTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATC