1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGAACCACAAATGTGCAATATTGTGTGTAAGCTTAAACTTGATGCCAAAACTGCAAAAGCGTTCAAAGAGAAGATTGATGATGAGTATCGAGTGAACATgtatggcattcagtaattgtcatgtattttcatgccacttttctgctgcaatcttgatatcttataatggacctaccttttacttgcag
species | Glycine max |
transcript | GLYMA14G11780.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTGCAAAAGCGTTCAAAGAGAAGATTGATGATGAGTATCGAGTGAACAT GATCCTTGATAACCTTCCTCTGGTTGTTCCCATAAAACGGATGGATGCAGAEST: gi|209711818|gb|BW674078.1|BW674078
genomic: ACTGCAAAAGCGTTCAAAGAGAAGATTGATGATGAGTATCGAGTGAACATgtatggcatt ... ttacttgcagGATCCTTGATAACCTTCCTCTGGTTGTTCCCATAAAACGGATGGATGCAGA
EST: ACTGCAAAAGCGTTCAAAGAGAAGATTGATGATGAGTATCGAGTGAACAT GATCCTTGATAACCTTCCTCTGGTTGTTCCCATAAAACGGATGGATGCAGA
genomic: ACTGCAAAAGCGTTCAAAGAGAAGATTGATGATGAGTATCGAGTGAACATgtatggcatt ... ttacttgcagGATCCTTGATAACCTTCCTCTGGTTGTTCCCATAAAACGGATGGATGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAACCACAAATGTGCAATATTGTGTGTAAGCTTAAACTTGATGCCAAAACTGCAAAAGCGTTCAAAGAGAAGATTGATGATGAGTATCGAGTGAACATgtatggcattcagtaattgtcatgtattttcatgccacttttctgctgcaatcttgatatcttataatggacctaccttttacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA