1 5' 3' | 2 5' 3' | 3 5' 3' |
GACAATATTTGAGGTTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagtctgaaaatcaagctgctctcactagctgtagtctgctaagtatcatatagcttttagcaatgaagctagttcctaaatttgtgcatgttt...
species | Glycine max |
transcript | GLYMA14G11400.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGATEST: gi|6069841|gb|AW099441.1|AW099441
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGATEST: gi|18720212|gb|BM523244.1|BM523244
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGATEST: gi|31462913|gb|CD404941.1|CD404941
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGATEST: gi|58016180|gb|CX702922.1|CX702922
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGATEST: gi|193461784|gb|FK426325.1|FK426325
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGATEST: gi|193607569|gb|FK557448.1|FK557448
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG CGAGGTTCTGAATCAAAGTATACAAA-GCAATGCAATCAAAGGACGAGGATEST: gi|193497323|gb|FK461157.1|FK461157
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAATATTTGAGGTTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagtctgaaaatcaagctgctctcactagctgtagtctgctaagtatcatatagcttttagcaatgaagctagttcctaaatttgtgcatgttt
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