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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgcttgcttccttgcttgccctggtccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaaaaaagtgtttgagagccttgacttgtggtcttggcattcaccattttgtctggccatttaaagcacttataaacttcttgttgtttactag

Basic information

species Glycine max
transcript GLYMA14G10520.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G10520.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G142984_T01 (Zea mays), 5'ss of exon 3
--------------------------------TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgcttgcttccttgcttgccctggtccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaaaaaagtgtttgagagccttgacttgtggtcttggcattcaccattttgtctggccatttaaagcacttataaacttcttgttgtttactag
                                ||| ||||| || ||| | || |||||   ||| |||||||| |||||||||||| || | ||||| ||||| ||||||||||| ||| |||||||||||||  || ||   || ||||       |  | ||||||  || | ||| ||||||   | | | |  ||||  | |  | | | |   ||  |||     || |   | ||   |||  |                                                               
CTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTTgtaagcccgcacttgagtctgatcatatcaccaaagttattcatgattgtaaaagggacagtgaggtgcctaat--gttggatttgagaacttttagcttgctatgtttcct-ttttgtccttttaggagattgtaaact--tgactaactagattaaa----ctttatcacttt--tttgcag---------------------------------------------------------------

upper sequence: GLYMA14G10520.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G142984_T02 (Zea mays), 5'ss of exon 3
TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgcttgcttccttgcttgccctggtccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaaaaaagtgtttgagagccttgacttgtggtcttggcattcaccattttgtctggccatttaaagcacttataaacttcttgttgtttactag
||| ||||| || ||| | || |||||   ||| |||||||| |||||||||||| || | ||||| ||||| ||||||||||| ||| |||||||||||||  || ||   || ||||       |  | ||||||  || | ||| ||||||   | | | |  ||||  | |  | | | |   ||  |||     || |   | ||   |||  |                                                               
TGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTTGTAAGCCCGCACTTGAGTCTGATCATATCACCAAAGTTATTCATGATTGTAAAAGGGACAGTGAGgtgcctaat--gttggatttgagaacttttagcttgctatgtttcct-ttttgtccttttaggagattgtaaact--tgactaactagattaaa----ctttatcacttt--tttgcag---------------------------------------------------------------

upper sequence: GLYMA14G10520.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G081924_T01 (Zea mays), 5'ss of exon 3
TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgcttgcttccttgcttgccctggtccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaaaaaagtgtttgagagccttgacttgtggtcttggcattcaccattttgtctggccatttaaagcacttataaacttcttgttgtttactag
||| ||||| || ||| | || |||||   ||| |||||||| |||||||||||| || | ||||| ||||| ||||||||||| ||| ||||||| |||||  || |||   |  ||||    |||  | ||||||  || |  || ||||||   | | | |  |||| || |  | | | |   |   | |     || |   | ||   |||  |                                                               
TGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTTGTAAGCCCGCACTTGAGTCTGATCATATCACCAAAGTTATTCATGATTGTAAAAGGGACAGCGAGgtgcctaatta--tgcattgggaacttt-tagcttgctatgttttct-ttttgtccttttaggagattgtagact--tgactaactagtttaga----ctttatcacttt---ttgcag---------------------------------------------------------------

upper sequence: GLYMA14G10520.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G25910.2 (Arabidopsis thaliana), 5'ss of exon 3
TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgcttgcttccttgcttgccctggtccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaaaaaagtgtttgagagccttgacttgtggtcttggcattcaccattttgtctggccatttaaagcacttataaacttcttgttgtttactag
||  || ||||| ||||||| | |||| | |||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| || ||||||||||| |||||  | |||| |  |||| |    |   |  | ||     | | | || ||||    ||  ||   ||| ||| ||  |    |                                                                                            
TGTCATCGAAGGTGGAGAGGTGATTATGAAAGCGTGTAAGCCTGCACTCGAGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaactttttgttgacttgttattatagct--catgacatatttatagtttatg--acaacatggataattttttttgtactacag-------------------------------------------------------------------------------------------

upper sequence: GLYMA14G10520.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g00650.t01 (Vitis vinifera), 5'ss of exon 3
TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgcttgcttccttgcttgccctggtccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaaaaaagtgtttgagagccttgacttgtggtcttggcattcaccattttgtctggccatttaaagcacttataaacttcttgttgtttactag
||| ||| | |||||||||  |||||| | ||| ||||||||||||||||| |||| ||||||||||||||| ||||| ||||||||||| || || ||||||||| ||| |||| |||   | ||||  ||| || |          || ||    | ||  ||| |    | ||||  ||   ||                                                                                               
TGCTATTCAGGGGGGAGAGATGCTTATGAAAGCCTGTAAGCCTGCACTTGAATCTAGTTACATCACAAAAGTTATTCACGATTGCAAACGAGATAGCGAGgtctctaattgattttatt---tacttc--tgcatgtcagcacatacattgtggcagtctttgaatct---tattgttattttgtag-----------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326693|gb|FK018880.1|FK018880
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTATACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTATACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG