Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGCCTATGATGAGTTAGCTTTGAAAAAGGCTGTTGCAAATCAGCCCGTCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttcttaattaatttctttcataaactaggaagtgtgcctattgcatagaagaagtagaatgggaagattcaaaattactgaagcataattatct...

Basic information

species Glycine max
transcript GLYMA14G09440.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13788909|gb|BG651500.1|BG651500
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|17401259|gb|BM178041.1|BM178041
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTTGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|27809134|gb|CB063556.1|CB063556
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|298194165|gb|HO040813.1|HO040813
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|18732476|gb|BM527066.1|BM527066
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|7925521|gb|AW831547.1|AW831547
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATNTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|26057322|gb|CA800236.1|CA800236
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTTGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|120496510|gb|EH224677.1|EH224677
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|10233760|gb|BE802648.1|BE802648
EST:     TCAGTGTATCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTTGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|4313561|gb|AI460680.1|AI460680
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|9258974|gb|BE347121.1|BE347121
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|27446257|gb|CA953380.1|CA953380
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|17402038|gb|BM178820.1|BM178820
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTTGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|193345032|gb|FK311658.1|FK311658
EST:     GGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: GGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|208117731|gb|GD914613.1|GD914613
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCA
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCA
EST: gi|9440374|gb|BE440880.1|BE440880
EST:     TCAGTGTAGCTATTGAAGGAGGGG-CAAGGAAATTCAATTATATGTATCT                         TGTGTATTCACTGGGAAGATGTG
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGA-GATGTG
EST: gi|10710550|gb|BF010268.1|BF010268
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|19348924|gb|BM893456.1|BM893456
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|17023584|gb|BM094618.1|BM094618
EST:     ATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: ATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|19346870|gb|BM891758.1|BM891758
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|27809145|gb|CB063567.1|CB063567
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|17021959|gb|BM092993.1|BM092993
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
EST: gi|5770740|gb|AI973914.1|AI973914
EST:     TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCT                         GGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT
genomic: TCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttct ... tttttgtcagGGTGTATTCACTGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTGCCTATGATGAGTTAGCTTTGAAAAAGGCTGTTGCAAATCAGCCCGTCAGTGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTgtaagtttcttaattaatttctttcataaactaggaagtgtgcctattgcatagaagaagtagaatgggaagattcaaaattactgaagcataattatct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG