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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTGCCGCAGTAAAGTAGATAAGGAAAAACTGACCGCTGGTACAAGAGTGGTTCTTGATATGACCACGCTAACCATAATGCGAGCTCTTCCACGTGAAgtaagtttttctgtttatttgcttcagatatttatttaatttggtgttcttgttgggctatctgatttggtttctttctgaaaatcatgtcctagtttttcgtgtctgatggtcaatatgatctatcgcatgttgacag

Basic information

species Glycine max
transcript GLYMA14G07750.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07750.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 3
TGGCTGCCGCAGTAAAGTAGATAAGGAAAAACTGACCGCTGGTACAAGAGTGGTTCTTGATATGACCACGCTAACCATAATGCGAGCTCTTCCACGTGAAgtaagtt--------tttctgttta---tttgcttca-gatatttatttaatttggtgttcttgttgggctatctgatttggtttctttctgaaaatcatgtcctagtttttcgtgtctgatggtcaatatgatctatcgcatgttgacag---------------------------------------
|||||| ||||||||||| |||||||||||||||||  |||| ||||||||||||||||||||||| || || || || ||||||||||||||||||||||||||||        | ||| | |    ||||||     |||   | |  ||    |  |    || |  |   |||||       ||  | |  || || | | |  |||| ||   |||   |||  |      |  |   |||                                            
TGGCTGTCGCAGTAAAGTGGATAAGGAAAAACTGACTTCTGGAACAAGAGTGGTTCTTGATATGACAACACTCACAATCATGCGAGCTCTTCCACGTGAAgtaagttaccatggttctctatgtggactttgctgtgtaataccaactggataacttagtggcattagaattgatgattactccatttggtcatgattattttcaacattttagttagtgacaatcataaaagaaaaaagagagtttgtgtggttctcctgatagactgtgctatgatgatgtttaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205449|gb|BU964702.1|BU964702
EST:     TGGTTCTTGATATGACCACGCTAACCATAATGCGAGCTCTTCCACGTGAA                         GTTGATCCAGTAGTTTACAATATGCTTCATGAGGATCCTGGTAATATCAGT
genomic: TGGTTCTTGATATGACCACGCTAACCATAATGCGAGCTCTTCCACGTGAAgtaagttttt ... atgttgacagGTTGATCCAGTAGTTTACAATATGCTTCATGAGGATCCTGGTAATATCAGT
EST: gi|15813624|gb|BI785899.1|BI785899
EST:     TGGTTCTTGATATGACCACGCTAACCATAATGCGAGCTCTTCCACGTGAA                         GTTGATCCAGTAGTTTACAATATGCTTCATGAGGATCCTGGTAATATCAGT
genomic: TGGTTCTTGATATGACCACGCTAACCATAATGCGAGCTCTTCCACGTGAAgtaagttttt ... atgttgacagGTTGATCCAGTAGTTTACAATATGCTTCATGAGGATCCTGGTAATATCAGT