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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAGTACTCCGTGCATGGCTCTTTGAGCATTTCCTTCATCCgtaagttcccctcccctgttcttattttatttttaacttatgatattagatctaataattgtttcccaaatttcatttgctaccag

Basic information

species Glycine max
transcript GLYMA14G07710.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07710.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g13150.t01 (Vitis vinifera), 5'ss of exon 3
AACTTGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAGTACTCCGTGCATGGCTCTTTGAGCATTTCCTTCATCCgtaagttcc-------cctcccctgttcttattttatttttaacttatgatattagatctaataattgtttcccaaatttcatttgctaccag
|  ||||||  ||| |||| || |||||||| ||||||||||| |||||||  ||||||||| | || ||  ||||||| |||||||| || ||||| ||||| |||||       | |      || || |  | ||  |  || | || ||| |  |  |  |    || ||  ||||| | |   | |||
AGTTTGGTGGGATGCGACATGCGTGGAGGCCACAGAGGGGACTGCCTGAAAGTTCTGTTTCAATCCTTCGCACATGGCTGTTTGAGCACTTTCTTCACCCgtatgttcctgaaccacttatttcctttttttcctgttcatcgctaaagaaatttgtccccactaagtctttcctgatttcttgtttcatcag

upper sequence: GLYMA14G07710.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ06042 (Selaginella moellendorffii), 5'ss of exon 2
AACTTGGTGTAATGAGACAA---GCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAGTACTCCGTGCATGGCTCTTTGAGCATTTCCTTCATCCgtaagttcccct----cccctgttcttattttattttt--aacttatgatattagatctaa--taattgtttcccaaatttcatttgctaccag--------
   | ||  |  | |  ||    || |||||||| ||| | ||||| || ||    || |||||  |  | || || |||||||||||||| ||||| ||||||||||||    |    |   || ||||  |  |   ||  | |||   || || | |      | |||| | ||  |   | | |   | | ||        
---TCGGGATGCTCAACCAGCACGCCTGGAGGCCGCAGCGAGGACTCCCCGAGCGATCGGTTTCGATCTTGCGAGCTTGGCTCTTTGAGCACTTCCTCCATCCgtaagtttttgtttggcttttgctcttcctcgaaagttggagcttggaatgtttggtgctgcttgattggtccctga--ctgagtgattgctagatttgcgg

upper sequence: GLYMA14G07710.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ30193 (Selaginella moellendorffii), 5'ss of exon 2
AACTTGGTGTAATGAGACAA---GCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAGTACTCCGTGCATGGCTCTTTGAGCATTTCCTTCATCCgtaagttcccctcccctgttcttatttt-----atttttaacttatgatattagat-ctaataattgtttcccaaatttcat--ttgct--accag----
   | ||  |  | |  ||    || |||||||| ||| | ||||| || ||    || |||||  |  | || || |||||||||||||| ||||| ||||||||||||    |   || ||  | ||       | ||  | |||   || || | | ||  |   |   ||||  | |   |  |||||  |   |    
---TCGGGATGCTCAACCAGCACGCCTGGAGGCCGCAGCGAGGACTCCCCGAGCGATCGGTTTCGATCTTGCGAGCTTGGCTCTTTGAGCACTTCCTCCATCCgtaagttttgtttggctttttctcttcctcgaaagttggagcttggaatgtttggtgctgctggattggtccctgactgggtgattgcttgatttgcggg