1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAACTCCAGAGCCTTTCCCTCTTCCAACGGAAGCCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGgtaaggtggatttccttaccatgcctccctgagagaaaatgaagatgaagaagaaacgagatggagactaaaaggagaaggcctaaactaaaatagaacc...
species | Glycine max |
transcript | GLYMA14G07160.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAG AACATGGAGCAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCTGGGAEST: gi|15285417|gb|BI469308.1|BI469308
genomic: CTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGgtaaggtgga ... tccttagcagAACATGGAGCAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCTGGGA
EST: CTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAG AACATGGAGCAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCTGGGAEST: gi|192326275|gb|FK017622.1|FK017622
genomic: CTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGgtaaggtgga ... tccttagcagAACATGGAGCAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCTGGGA
EST: CTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAG AACATGGAGCAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCTGGGA
genomic: CTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGgtaaggtgga ... tccttagcagAACATGGAGCAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACTCCAGAGCCTTTCCCTCTTCCAACGGAAGCCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGgtaaggtggatttccttaccatgcctccctgagagaaaatgaagatgaagaagaaacgagatggagactaaaaggagaaggcctaaactaaaatagaacc
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaga