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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGGTTTGCAAAATTACTGCTTGGGGAAGACATGTCAGGATCTGGGAAAGGAGTGTGCAGCGCTTTGGCCATCTCTAATGCTATTACTAATTTGTGTGgtatgctttctttgtaacatatgtattgagaaagtgctaccttttctggattgacaaaattttcatgttacgtttcgaattttaatgttgttatactaatgttttaaatttgaatttcatgcaacacgtag

Basic information

species Glycine max
transcript GLYMA14G06930.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06930.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g02710.t01 (Vitis vinifera), 5'ss of exon 2
GAAAGGTTTGCAAAATTACTGCTTGGGGAAGACATGTCAGGATCTGGGAAAGGAGTGTGCAGCGCTTTGGCCATCTCTAATGCTATTACTAATTTGTGTGgtatgctttctttgtaacatatgtattgagaaagtgctaccttttctggattgacaaaattttcatgttacgtttcgaattttaatgttgttatactaatgttttaaatttgaatttcatgcaacacgtag
|| |||||| | ||| |  ||||||| |||||||||||||| ||||| ||||| || || |  ||||||||||| || |||||||| || ||| | || ||| || ||||| | |  |||      | ||     |||   ||||   | |    |   ||||  | ||   |||  ||||  ||| |  ||  | |    ||          ||| ||||  |    |||
GAGAGGTTTTCGAAACTGTTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGTACAGCTTTGGCCATTTCAAATGCTATCACCAATCTTTGCGgtgtgttttctctctctcattc----taag-----gctttgtttttcagttaattagtcttttttttttggctttttaattgcaat-tcatttcatttccatt----------attccatgtcatctatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207842811|gb|GD817323.1|GD817323
EST:     AGGAGTGTGCAGCGCTTTGGCCATCTCTAATGCTATTACTAATTTGTGTG                         CCACTGTGTTTGGGCAATTGTGGAGACTAGAACCTATACCTTGTGAAAAGA
genomic: AGGAGTGTGCAGCGCTTTGGCCATCTCTAATGCTATTACTAATTTGTGTGgtatgctttc ... caacacgtagCCACTGTGTTTGGGCAATTGTGGAGACTAGAACCTATACCTTGTGAAAAGA