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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGCTCAAAATGTTGAGAGTTCCCATTGCTTAACCATGATGGAAGCCGTCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggcacacaatatatattttcttagacaatactcttctataaagttggttaattttccaattcaatagccaaggtttatatgattcattattgtgctcacag

Basic information

species Glycine max
transcript GLYMA14G05020.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G05020.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0122g00610.t01 (Vitis vinifera), 5'ss of exon 3
TCCAGCTCAAAATGTTGAGAGTTCCCATTGCTTAACCATGATGGAAGCCGTCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggcacacaatat-atattttcttagacaatactcttctataaagttggttaattttccaattcaatagccaaggtttatatgattcattattgtgctcacag
||| || |||||||||||||||| ||| ||| | || ||||||||||| || ||||| |||| ||| ||||||||||| ||||||||||||||  | ||||| |||    |    |||| | |||     |||  ||  |  | | ||    ||   ||  |  ||| | |||      | || |    | | | | ||  | |     
TCCGGCCCAAAATGTTGAGAGTTGCCACTGCATTACAATGATGGAAGCTGTTAATGATGGGAAGGATCTTCACATCTCTGTGACCATGCCTTCTGTCGAGgtaattgaaaatttcatattacattaatgcagatcattttaatttgta---ctgaaaaaagt--caagtgaat---tgggattcaagaaagtgaatgtttggattgtt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397680|gb|EV267553.1|EV267553
EST:     TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAG                         GTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggc ... gtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|254321139|gb|GR827588.1|GR827588
EST:     TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAG                         GTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggc ... gtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|16277108|gb|BI942208.1|BI942208
EST:     TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAG                         GTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggc ... gtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|27808964|gb|CB063386.1|CB063386
EST:     TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAG                         GTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggc ... gtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|23064170|gb|BU578943.1|BU578943
EST:     TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAG                         GTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggc ... gtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|254321138|gb|GR827587.1|GR827587
EST:     TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAG                         GTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggc ... gtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG