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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAAACCTGAAGAGTCTCGTTAGCTTGGACTTGTACAACAACAACATATCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgtttaataacatattaagcttgactggacagatctgtggcatttgctttcccttctttcatttgagtttcttacaagactttgaatgatgca...

Basic information

species Glycine max
transcript GLYMA14G04520.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23063666|gb|BU578586.1|BU578586
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|213588073|gb|DB979179.1|DB979179
EST:     GGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: GGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|17964291|gb|BM271028.1|BM271028
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|193328213|gb|FK293450.1|FK293450
EST:     GGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: GGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|37995157|gb|CF806746.1|CF806746
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|298196158|gb|HO044549.1|HO044549
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACAGACTAACTGGCCC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCC
EST: gi|15814273|gb|BI786548.1|BI786548
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|19053727|gb|BM732394.1|BM732394
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|14125238|gb|BG789676.1|BG789676
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|37996287|gb|CF807876.1|CF807876
EST:     TCANGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCANTGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|58025114|gb|CX711855.1|CX711855
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|192326528|gb|FK017275.1|FK017275
EST:     CAGGCACCATCCCACCTTCATTGGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: CAGGCACCATCCCACCTTCATTGGGG-AAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|213589334|gb|DB961667.1|DB961667
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGAT
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGAT
EST: gi|15815888|gb|BI788163.1|BI788163
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|24135865|gb|BU926375.1|BU926375
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|207828337|gb|GD799622.1|GD799622
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|23056915|gb|BU577818.1|BU577818
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|7029580|gb|AW459421.1|AW459421
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|120495970|gb|EH224137.1|EH224137
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|26057238|gb|CA800152.1|CA800152
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACAGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|13790989|gb|BG653580.1|BG653580
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|27424142|gb|CA935662.1|CA935662
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
EST: gi|298185858|gb|HO031019.1|HO031019
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACAGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgt ... ttctttgcagACGACTCAATGACAACCGACTAACTGGCCCGATCCCCAAGGAACTTGCTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGGAAACCTGAAGAGTCTCGTTAGCTTGGACTTGTACAACAACAACATATCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtatgtttaataacatattaagcttgactggacagatctgtggcatttgctttcccttctttcatttgagtttcttacaagactttgaatgatgca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc