Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTCTTCTAGAATCACGAGAAAGACTTGGTGGCCGAATTCACACTGACTACTCATTTGGCTTTCCTGTTGACCTGGGTGCATCGTGgtaaagcttaccctctttgttctcctttttttttcttcatgttgacaagaatgttgcatttctccattttttagtattaaaaatggatgactgtgattcag

Basic information

species Glycine max
transcript GLYMA14G03610.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03610.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g53190.1 (Oryza sativa), 5'ss of exon 4
GTTATTCTTCTAGAATCACGAGAAAGACTTGGTGGCCGAATTCACACTGACTACTCATTTGGCTTTCCTGTTGACCTGGGTGCATCGTGgtaaagcttaccctctttgttctcctttt--tttttcttcatgttgacaagaatgttgcatttctccattttttagtattaaaaatggatgactgtgat--tcag
||| ||||||||||||| || || ||  | |||||  ||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||| | | |   |        | |  | |   || ||    ||| || ||| | | ||   |    ||||| |||   ||  |       |   |||||   ||||
GTTGTTCTTCTAGAATCTCGTGACAGGATAGGTGGTAGAATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttcctctctgacaatattttctgaattatttgaaatggtggcaaaagt-ttatctggaaccattatttttaatccacttccattttgtgtgagcatcag

upper sequence: GLYMA14G03610.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g53195.1 (Oryza sativa), 5'ss of exon 3
GTTATTCTTCTAGAATCACGAGAAAGACTTGGTGGCCGAATTCACACTGACTACTCATTTGGCTTTCCTGTTGACCTGGGTGCATCGTGgtaaagcttaccctctttgttctccttt--ttttttcttcatgttgacaagaatgttgcatttctccattttttagtattaaaaatggatgactgtgattcag
||| ||||||||||||| || || ||  | |||||  ||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||| | | |   |        | |  | |   || ||    ||| || ||| |                                                   
GTTGTTCTTCTAGAATCTCGTGACAGGATAGGTGGTAGAATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttcctctctgacaatattttctgaattatttgaaatggtggcaaaag--------------------------------------------------

upper sequence: GLYMA14G03610.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G396856_T02 (Zea mays), 5'ss of exon 4
GTTATTCTTCTAGAATCACGAGAAAGACTTGGTGGCCGAATTCACACTGACTACTCATTTGGCTTTCCTGTTGACCTGGGTGCATCGTGgtaaagcttaccctctttgttctcctttttttttcttcatgttgaca--agaatgttgcatttc-tccattttttagtattaaaaatggatgactgtgattcag
||||||||||| ||||| || || ||| |||||||| || |||||||||||||||| ||||| ||||| || ||  |||| ||||| |||| |     |  || ||     | |    | |  |   | ||| |      |    ||||||   |   ||||| |  |||   | ||                
GTTATTCTTCTGGAATCTCGTGATAGAATTGGTGGCAGAGTTCACACTGACTACTCTTTTGGGTTTCCAGTCGATTTGGGAGCATCTTGgtgagttccattcttttgaactttcaccatgtgcccaaaagttcatcttgaaggaatgcattgagtgtttttttcatcatttctattgagaag-----------

upper sequence: GLYMA14G03610.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G59050.1 (Arabidopsis thaliana), 5'ss of exon 2
-----------GTTATTCTTCTAGAATCACGAGAAAGACTTGGTGGCCGAATTCACACTGACTACTCATTTGGCTTTCCTGTTGACCTGGGTGCATCGTGgtaaagcttaccctctttgttctcctttttttttcttcatgttgacaagaatgttgcatttctccattttttagtattaaaaatggatgactgtgattcag
           ||| || |  | || || || || ||| ||||||| ||| |||||||||| ||||||||||| ||||| ||||| || |||||||| ||||||        ||| ||   |   | |||||  ||   || ||    ||   ||   | ||  |  |    | ||   || || | |   |||||  |||
CTTCCTTTCAGGTTGTTGTATTGGAGTCTCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCAGTTGATCTCGGTGCATCTTGgtaatatcatggctccttcaacctatctttttcactgattgctgtttggatcttt---tgtcatcgatgccaactaagcaatatcgtt--ttgtga--cag

upper sequence: GLYMA14G03610.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G43020.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTATTCTTCTAGAATCACGAGAAAGACTTGGTGGCCGAATTCACACTGACTACTCATTTGGCTTTCCTGTTGACCTGGGTGCATCGTGgtaaagcttaccctctttgttctcctttttttttcttc-atgttgacaagaatgttgcatttctccattttttag-tattaaaaatggatgactgtgattcag
|||||  | || || || || || ||| ||||||| ||| |||||||||| ||||||||||| ||||||||||| || |||||||| ||||||        |||   | |||    |  | |  ||  ||| ||    |  | | |  |||    |  |||  | ||  | |     ||   | ||   |||
GTTATGGTACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATCTTGGTGCATCATGgtaa-------tctcacggctctttcatcctgtcattagatgatgttttggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacag

upper sequence: GLYMA14G03610.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0028g01120.t01 (Vitis vinifera), 5'ss of exon 3
GTTATTCTTCTAGAATCACGAGAAAGACTTGGTGGCCGAATTCACACTGACTACTCATTTGGCTTTCCTGTTGACCTGGGTGCATCGTGgtaaagcttaccctctttgttctcctttttttttcttcatgttgacaagaatgttgcatttctccattttttagtattaaaaatggatgactgtgattcag
||| ||||  | ||||| || || ||| ||||||| ||  |||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||||  ||   || || |     |||| |||||  | |         | ||    | | ||  |  |  |||  ||      |  |  | |||  |  ||
GTTGTTCTGTTGGAATCGCGTGATAGAATTGGTGGACGGGTTCATACTGATTACTCATTTGGTTTTCCTGTTGACCTGGGAGCATCATGgtaaacttttatcttttag-----ctttctttttgctaaaacc--tgtggatacctcctgtcaactctaattaaaatctct--ttcaaaattgtactcaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254349086|gb|GR860358.1|GR860358
EST:     ATTCACACTGACTACTCATTTGGCTTTCCTGTTGACCTGGGTGCATCGTG                         GTTGCATGGAGTTTGCAAGGAGAATCCACTGGCTCCATTGATTGGGAAGCT
genomic: ATTCACACTGACTACTCATTTGGCTTTCCTGTTGACCTGGGTGCATCGTGgtaaagctta ... tgtgattcagGTTGCATGGAGTTTGCAAGGAGAATCCACTGGCTCCATTGATTGGGAAGCT
EST: gi|37996288|gb|CF807877.1|CF807877
EST:     ATTCACACTGACTACTCATTTGGCTTTCCTGTTGACCTGGGTGCATCGTG                         GTTGCATGGAGTTTGCAAGGAGAATCCACTGGCTCCATTGATTGGGAAGCT
genomic: ATTCACACTGACTACTCATTTGGCTTTCCTGTTGACCTGGGTGCATCGTGgtaaagctta ... tgtgattcagGTTGCATGGAGTTTGCAAGGAGAATCCACTGGCTCCATTGATTGGGAAGCT