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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGGTAACTTAGAACAATGGTTACATGGAGACATGCATCAATATGGAACACTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACTGCCAAAGCgtaagttcagggtgcaacttaaaatatataccatggtaatcttttgtataatctggtgccaaatcactcggtataattatcataaatctctcatctctga...

Basic information

species Glycine max
transcript GLYMA14G03290.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 3
ACAATGGTAACTTAGAACAATGGTTACATGGAGACATGCATCAATATGGAACACTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACTGCCAAAGCgtaagttcagggtgcaacttaaaatatataccatggtaatcttttgtataatctggtgccaaatcactcggtataattatcataaatctctcatctctga
| | ||||||||||||||||||| |||||||||  ||||  ||| ||||||  || || ||||| || || |||||| | ||   ||| |||||  ||||||||||    |||   |   |   ||  |    | |  || | ||  ||  |    |   |||    ||  |  ||||   | || | |           
ATAGTGGTAACTTAGAACAATGGCTACATGGAGCAATGCGGCAACATGGAAATCTCACTTGGGAAGCACGGATGAAAATCATTACTGGTACTGCACAAGCgtaagt----ggtttgaaacagtttagcttttgttg-gatatgttcaatgcttgattattaaaagggtc--tgcaatttgtacaactttacag-------

upper sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 4
ACAATGGTAACTTAGAACAATGGTTACATGGAGACATGCATCAATATGGAACACTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACTGCCAAAGCgtaagttcagggtgcaacttaaaatatataccatggt--aatcttttgtataatctggtgccaaatcactcggtataattatcataaatctctcatctctga----------
| | ||||||||||||||||||| ||||||||| ||||    || |  | || || || |||||||| ||||||||| |  |  |||| |||||  | |||||||||           ||||||| |  ||  | ||   | |||||   | |  |  |   |||  ||||  ||     ||  | |    |||    ||            
ATAGTGGTAACTTAGAACAATGGCTACATGGAGCCATGGGAAAACAAAGCACTCTCACTTGGGAGGCTCGCATGAAAATCCTTGTTGGTACTGCGCAGGCgtaagtt---------gtttaaaatgtg-actgttgttggaccttttacttgaaatt-tcaaaaacaactctttaaggggatattgacatgctctgtactacaattttacag

upper sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
ACAATGGTAACTTAGAACAATGGTTACATGGAGACATGCATCAATATGGAACACTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACTGCCAAAGCgtaagttcagggtgcaacttaaaatatataccatggtaatcttttgtataatctggtgccaaatcactcggtataattatcataaatctctcatctctga----
||||||| ||||||||||| ||| | |||||||  ||||  |||||||| |  ||||| ||||||||||||||||| ||||| ||||| || ||||| |||||||| ||     ||||| ||||||  |  |||  | |   ||||  | |   |   | | || | |      ||||| |     ||| |  ||| |||    
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaactgaaaata-gtgtcatcattaagatttgcgttactagaaccgagattaatataggcaattacctcc--tctatt-tctatgaaatc