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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTCCCATGCATGTGCAGAATGCTCGTGAAGTACCTGAGTATGAGATTGATCCTTCTGAACTTGATTTTACTAATAGTGTTTGCATAACAAAGgtaagctttcaagtttcctttctctgtatggtcaatcatgttttgtaacttgatttctccttttgccttgttttgacatattctctcaattcaatttgcgctgatttattttgtgtttcatattttatattgattattag

Basic information

species Glycine max
transcript GLYMA14G03040.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03040.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G045366_T01 (Zea mays), 5'ss of exon 3
ATGGCTCCCATGCATGTGCAGAATGCTCGTGAAGTACCTGAGTATGAGATTGATCCTTCTGAACTTGATTTTACTAATAGTGTTTGCATAACAAAGgtaagctttcaagt-ttcctttctctgtatggtcaatcatgttttgtaacttgatttctccttttgccttgttttgacatattctctcaattcaatttgcgctgatttattttgtgtttcatattttatattgattattag
|| ||||| ||||||||| | |||| ||||||||| ||||| ||||||||||| ||  |||| |||||||| | |||| |   |    || | |||||  || |  | || || | || ||| |    |  |  |   |||  || ||| ||    ||    | | ||      |   |   | ||   |   || ||||                                     
ATTGCTCCGATGCATGTGAACAATGTTCGTGAAGTTCCTGAATATGAGATTGACCCGGCTGAGCTTGATTTCAGTAATGGCAATGATTTATCCAAGgtctgcatatatgtatttccttttcttt----tacacgaaacttttcaaattggttatctctagcac-tagtaaacttaccattggttaaccaatcatgtgctgt------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12774326|gb|BG239253.1|BG239253
EST:     AGATTGATCCTTCTGAACTTGATTTTACTAATAGTGTTTGCATAACAAAG                         GGAACTTTCAGGATTGCATTATGGCGTGGAATTCAGGTTGCTGTCAAGACA
genomic: AGATTGATCCTTCTGAACTTGATTTTACTAATAGTGTTTGCATAACAAAGgtaagctttc ... tgattattagGGAACTTTCAGGATTGCATTATGGCGTGGAATTCAGGTTGCTGTCAAGACA