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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCCAACTCCGGTAGTTATAATTGATCAAGACTCTGACCCAGATGCAACTGTGGTCGAGATAACCTTTGGTGATCGCCTTGGGGCTCTTCTTGACACTgtaagccgttcatttcttccttgtattatatgtatattaattaattaatataaacagaatttcaaaatctgactgtattgcag

Basic information

species Glycine max
transcript GLYMA13G44740.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44740.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 3
CATTCCAACTCCGGTAGTTATAATTGATCAAGACTCTGACCCAGATGCAACTGTGGTCGAGATAACCTTTGGTGATCGCCTTGGGGCTCTTCTTGACACTgtaagccgttcatttcttccttgtattatatgtatattaattaattaatataaacagaatttcaaaatctgactgtattgcag----------------------------------------------------------------------------------------------------------------------
 ||||| |||||   ||||||||| ||||||||||| || ||| |||||||| | || |||||||| |||||||||||| | || || ||||| |||||||||         || | |   || || | || | | ||  ||   |||| |        ||     || | | ||  |   |                                                                                                                       
AATTCCCACTCCCAAAGTTATAATAGATCAAGACTCGGATCCAAATGCAACTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataacttttacatttctggatcagatat-ttttgtttgtctaattt---tttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5509224|gb|AI855782.1|AI855782
EST:     CTGTGGTCGAGATAACCTTTGGTGATCGCCTTGGGGCTCTTCTTGACACT                         ATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTT
genomic: CTGTGGTCGAGATAACCTTTGGTGATCGCCTTGGGGCTCTTCTTGACACTgtaagccgtt ... tgtattgcagATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTT