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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTTCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaacattgtgcacctataacttaagtgtagacttgggactgatataggataactattctattaaacactatggtgaattgatgattaatttgcta...

Basic information

species Glycine max
transcript GLYMA13G44000.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44000.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G15660.1 (Arabidopsis thaliana), 5'ss of exon 3
GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTTCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaacattgtg----cacctataacttaagtgtagacttggga--ctgatataggataactattctattaaacactatggtgaattgatgattaatttgcta------
||||| |||||||||||||||||||| |||||||||||||| ||||| | ||| |||||||| ||||| || || || || ||||| || || |||||| ||||||    |||          |  |||| |||        || ||   |  | ||  ||     ||    |      | || |  | |      | || | ||       
GATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAgtaagttttgttgaaatgttgattgaaactgaagaagccttctgtgaattttctttactattggcgttaggctctgtgttctgatctactatcttgtgatatccttctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298170152|gb|HO018776.1|HO018776
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|298174489|gb|HO014634.1|HO014634
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGGGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCCGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|17154054|gb|BM143987.1|BM143987
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|151403951|gb|EV273761.1|EV273761
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|298182900|gb|HO028113.1|HO028113
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|17153892|gb|BM143825.1|BM143825
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|192323236|gb|FK017402.1|FK017402
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|192329314|gb|FK020233.1|FK020233
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|151397263|gb|EV267136.1|EV267136
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|13562443|gb|BG550663.1|BG550663
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAAAG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|31464055|gb|CD406083.1|CD406083
EST:     TCCACTGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACTATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|151410513|gb|EV280328.1|EV280328
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|9203815|gb|BE330039.1|BE330039
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|58019023|gb|CX705765.1|CX705765
EST:     TCCCCAGTGTGGATTTAGTTCTTTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACA-TTTGGAAGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|192306124|gb|FG996570.1|FG996570
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|298190798|gb|HO032919.1|HO032919
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGGACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|193689192|gb|FK631403.1|FK631403
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|14012002|gb|BG726924.1|BG726924
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|10232984|gb|BE801872.1|BE801872
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|12690674|gb|BG157010.1|BG157010
EST:     TCCACAGTGTGGATTTAGTTCTC-TGGAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|192306123|gb|FG996569.1|FG996569
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|18039188|gb|BM307482.1|BM307482
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|17021277|gb|BM092311.1|BM092311
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG